Add tabs, arvados specific instructions & links to solutions

[rnaseq-cwl-training.git] / answers / ep6 / main.cwl

diff --git a/answers/ep6/main.cwl b/answers/ep6/main.cwl
deleted file mode 100644 (file)
index 97461ce..0000000
--- a/answers/ep6/main.cwl
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-cwlVersion: v1.2
-class: Workflow
-label: RNAseq CWL practice workflow
-
-inputs:
-  fq: File[]
-  genome: Directory
-  gtf: File
-
-steps:
-  alignment:
-    run: alignment.cwl
-    scatter: fq
-    in:
-      fq: fq
-      genome: genome
-      gtf: gtf
-    out: [qc_html, bam_sorted_indexed]
-
-  featureCounts:
-    requirements:
-      ResourceRequirement:
-        ramMin: 500
-    run: featureCounts.cwl
-    in:
-      counts_input_bam: alignment/bam_sorted_indexed
-      gtf: gtf
-    out: [featurecounts]
-
-  ### 2. Organizing output files into Directories
-  output-subdirs:
-    run: subdirs.cwl
-    in:
-      fq: fq
-      bams: alignment/bam_sorted_indexed
-      qc: alignment/qc_html
-    out: [dirs]
-
-outputs:
-  dirs:
-    type: Directory[]
-    outputSource: output-subdirs/dirs
-
-  featurecounts:
-    type: File
-    outputSource: featureCounts/featurecounts
-
-requirements:
-  SubworkflowFeatureRequirement: {}
-  ScatterFeatureRequirement: {}