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[rnaseq-cwl-training.git] / answers / ep4 / featureCounts.cwl

diff --git a/answers/ep4/featureCounts.cwl b/answers/ep4/featureCounts.cwl
deleted file mode 100644 (file)
index 128ae4b..0000000
--- a/answers/ep4/featureCounts.cwl
+++ /dev/null
@@ -1,29 +0,0 @@
-# File header
-cwlVersion: v1.2
-class: CommandLineTool
-
-# Command line tool inputs
-inputs:
-  gtf: File
-  counts_input_bam: File
-
-# Specifying the program to run
-baseCommand: featureCounts
-
-# Command arguments
-arguments: [-T, $(runtime.cores),
-            -a, $(inputs.gtf),
-            -o, featurecounts.tsv,
-            $(inputs.counts_input_bam)]
-
-# Outputs section
-outputs:
-  featurecounts:
-    type: File
-    outputBinding:
-      glob: featurecounts.tsv
-
-# Running in a container
-hints:
-  DockerRequirement:
-    dockerPull: quay.io/biocontainers/subread:1.5.0p3--0