Note: if you don't have example sequence data or the STAR index files, see [setup](/setup.html).
-<div>
-{% tabs input %}
-
-{% tab input generic %}
+{% capture generic_input_tab_content %}
main-input.yaml
```
fq:
> logging. The logging you see, how access other logs, and how to
> track workflow progress will depend on your CWL runner platform.
{: .challenge }
+{% endcapture %}
-{% endtab %}
-
-{% tab input arvados %}
+{% capture arvados_input_tab_content %}
main-input.yaml
```
fq:
> then use the `Run CWL Workflow on Arvados` task.
>
{: .challenge }
-{% endtab %}
-{% endtabs %}
+{% endcapture %}
+
+<div class="tabbed">
+ <ul class="tab">
+ <li><a href="#section-arvados-input">arvados</a></li>
+ <li><a href="#section-generic-input">generic</a></li>
+ </ul>
+
+ <section id="section-arvados-input">{{ arvados_input_tab_content | markdownify}}</section>
+ <section id="section-generic-input">{{ generic_input_tab_content | markdownify}}</section>
</div>
# Debugging the workflow
{: .challenge }
> ## Episode solution
-> * <a href="{% link ../assets/answers/ep3/main.cwl %}">main.cwl</a>
+> * <a href="../assets/answers/ep3/main.cwl">main.cwl</a>
{: .solution}
# Workflow results
The CWL runner will print a results JSON object to standard output. It will look something like this (it may include additional fields).
-<div>
-{% tabs output %}
+{% capture generic_output_tab_content %}
-{% tab output generic %}
```
{
"bam_sorted_indexed": {
}
```
{: .language-yaml }
-{% endtab %}
+{% endcapture %}
-{% tab output arvados %}
+{% capture arvados_output_tab_content %}
```
{
"bam_sorted_indexed": {
}
```
{: .language-yaml }
-{% endtab %}
-{% endtabs %}
+{% endcapture %}
+
+<div class="tabbed">
+ <ul class="tab">
+ <li><a href="#section-arvados-output">arvados</a></li>
+ <li><a href="#section-generic-output">generic</a></li>
+ </ul>
+
+ <section id="section-arvados-output">{{ arvados_output_tab_content | markdownify}}</section>
+ <section id="section-generic-output">{{ generic_output_tab_content | markdownify}}</section>
</div>
This has a similar structure as `main-input.yaml`. The each output