Add more background to lesson 1.

[rnaseq-cwl-training.git] / lesson4 / lesson4.md

diff --git a/lesson4/lesson4.md b/lesson4/lesson4.md
index 6aa45de54b98f3ac44a585eb4bba587a6aa5a670..91df9bdbdf07f5cb8a8db50c47c4cbd12b91bb45 100644 (file)
--- a/lesson4/lesson4.md
+++ b/lesson4/lesson4.md
@@ -17,10 +17,10 @@ steps:
   alignment:
     run: alignment.cwl
     in:
-         fq: fq
-         genome: genome
-         gtf: gtf
-       out: [qc_html, bam_sorted_indexed, featurecounts]
+      fq: fq
+      genome: genome
+      gtf: gtf
+    out: [qc_html, bam_sorted_indexed, featurecounts]
 ```
 
 In the outputs section, all the output sources are from the alignment step:
@@ -71,12 +71,12 @@ run `alignment.cwl` for each value in the list in the `fq` parameter.
 steps:
   alignment:
     run: alignment.cwl
-       scatter: fq
+    scatter: fq
     in:
-         fq: fq
-         genome: genome
-         gtf: gtf
-       out: [qc_html, bam_sorted_indexed, featurecounts]
+      fq: fq
+      genome: genome
+      gtf: gtf
+    out: [qc_html, bam_sorted_indexed, featurecounts]
 ```
 
 Because the scatter produces multiple outputs, each output parameter