Second pass. Lots of work.

[rnaseq-cwl-training.git] / answers / ep4 / featureCounts.cwl

diff --git a/answers/ep4/featureCounts.cwl b/answers/ep4/featureCounts.cwl
index c96a4951a5f1a9e9cbf1f67d3938f2e91d1b3bf6..128ae4b6b28579df382b07df5ad9ffe7fb23996d 100644 (file)
--- a/answers/ep4/featureCounts.cwl
+++ b/answers/ep4/featureCounts.cwl
@@ -1,29 +1,29 @@
-### 1. File header
+# File header
 cwlVersion: v1.2
 class: CommandLineTool
 
-### 2. Command line tool inputs
+# Command line tool inputs
 inputs:
   gtf: File
   counts_input_bam: File
 
-### 3. Specifying the program to run
+# Specifying the program to run
 baseCommand: featureCounts
 
-### 4. Command arguments
+# Command arguments
 arguments: [-T, $(runtime.cores),
             -a, $(inputs.gtf),
             -o, featurecounts.tsv,
             $(inputs.counts_input_bam)]
 
-### 5. Outputs section
+# Outputs section
 outputs:
   featurecounts:
     type: File
     outputBinding:
       glob: featurecounts.tsv
 
-### 6. Running in a container
+# Running in a container
 hints:
   DockerRequirement:
     dockerPull: quay.io/biocontainers/subread:1.5.0p3--0