Merge pull request #243 from alee/docker

[rnaseq-cwl-training.git] / Makefile

diff --git a/Makefile b/Makefile
index 9d874013fa4c9696f89b90d6b67bf6c5a519e11e..f0b73e6064bf52e64c6c27967a70c81a21cc2d89 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -68,7 +68,7 @@ RMD_DST = $(patsubst _episodes_rmd/%.Rmd,_episodes/%.md,$(RMD_SRC))
 # Lesson source files in the order they appear in the navigation menu.
 MARKDOWN_SRC = \
   index.md \
-  CONDUCT.md \
+  CODE_OF_CONDUCT.md \
   setup.md \
   $(sort $(wildcard _episodes/*.md)) \
   reference.md \
@@ -93,16 +93,16 @@ ${RMD_DST} : ${RMD_SRC}
        @bin/knit_lessons.sh ${RMD_SRC}
 
 ## lesson-check     : validate lesson Markdown.
-lesson-check :
+lesson-check : lesson-fixme
        @bin/lesson_check.py -s . -p ${PARSER} -r _includes/links.md
 
 ## lesson-check-all : validate lesson Markdown, checking line lengths and trailing whitespace.
 lesson-check-all :
-       @bin/lesson_check.py -s . -p ${PARSER} -l -w
+       @bin/lesson_check.py -s . -p ${PARSER} -r _includes/links.md -l -w --permissive
 
 ## unittest         : run unit tests on checking tools.
 unittest :
-       python bin/test_lesson_check.py
+       @bin/test_lesson_check.py
 
 ## lesson-files     : show expected names of generated files for debugging.
 lesson-files :