Added links to YAML and CWL array

[rnaseq-cwl-training.git] / setup.md

diff --git a/setup.md b/setup.md
index 882d4f9807cfc5f3380253bc50c69cf237c1f925..4e144c2a59cf901ba584516268301d779826f21d 100644 (file)
--- a/setup.md
+++ b/setup.md
@@ -110,6 +110,8 @@ git submodule add https://github.com/common-workflow-library/bio-cwl-tools.git
 > you do not need to perform this download step.
 {: .callout}
 
+Use `arv-copy` to copy the collection:
+
 ```
 arv-copy --src jutro 9178fe1b80a08a422dbe02adfd439764+925
 ```
@@ -130,6 +132,8 @@ This is a rather large download (4 GB).  Depending on your bandwidth, it may be
 > if you already have access to this collection.
 {: .callout}
 
+Use `arv-copy` to copy the collection:
+
 ```
 arv-copy --src jutro 02a12ce9e2707610991bd29d38796b57+2912
 ```
@@ -159,6 +163,11 @@ arvados-cwl-runner bio-cwl-tools/STAR/STAR-Index.cwl chr1-star-index.yaml
 ```
 {: .language-bash }
 
+## Sneak peak
+If you want to jump ahead, here are links to some of the CWL concepts you just used
+  - [YAML array] (https://www.commonwl.org/user_guide/yaml/#arrays)
+  - [CWL array inputs] (https://www.commonwl.org/user_guide/09-array-inputs/index.html)
+  
 {% endtab %}
 {% endtabs %}
 </div>