Makefile: suppress error message on Windows

[rnaseq-cwl-training.git] / Makefile

diff --git a/Makefile b/Makefile
index f0b73e6064bf52e64c6c27967a70c81a21cc2d89..4daaae66a4ae8aff0c488381cc5cf055dd62d5d2 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -4,10 +4,26 @@
 # Settings
 MAKEFILES=Makefile $(wildcard *.mk)
 JEKYLL=jekyll
-JEKYLL_VERSION=3.7.3
+JEKYLL_VERSION=3.8.5
 PARSER=bin/markdown_ast.rb
 DST=_site
 
+# Check Python 3 is installed and determine if it's called via python3 or python
+# (https://stackoverflow.com/a/4933395)
+ifneq (, $(shell which python3 2>/dev/null))
+  PYTHON := python3
+else ifneq (, $(shell which python))
+  PYTHON_VERSION_FULL := $(wordlist 2,4,$(subst ., ,$(shell python --version 2>&1)))
+  PYTHON_VERSION_MAJOR := $(word 1,${PYTHON_VERSION_FULL})
+  ifneq (3, ${PYTHON_VERSION_MAJOR})
+    $(error "Your system does not appear to have Python 3 installed.")
+  endif
+  PYTHON := python
+else
+    $(error "Your system does not appear to have any Python installed.")
+endif
+
+
 # Controls
 .PHONY : commands clean files
 .NOTPARALLEL:
@@ -15,7 +31,7 @@ all : commands
 
 ## commands         : show all commands.
 commands :
-       @grep -h -E '^##' ${MAKEFILES} | sed -e 's/## //g'
+       @grep -h -E '^##' ${MAKEFILES} | sed -e "s/## //g"
 
 ## docker-serve     : use docker to build the site
 docker-serve :
@@ -43,7 +59,7 @@ clean :
        @find . -name '*.pyc' -exec rm {} \;
 
 ## clean-rmd        : clean intermediate R files (that need to be committed to the repo).
-clear-rmd :
+clean-rmd :
        @rm -rf ${RMD_DST}
        @rm -rf fig/rmd-*
 
@@ -54,7 +70,7 @@ clear-rmd :
 
 ## workshop-check   : check workshop homepage.
 workshop-check :
-       @bin/workshop_check.py .
+       @${PYTHON} bin/workshop_check.py .
 
 ## ----------------------------------------
 ## Commands specific to lesson websites.
@@ -88,21 +104,20 @@ HTML_DST = \
 ## lesson-md        : convert Rmarkdown files to markdown
 lesson-md : ${RMD_DST}
 
-# Use of .NOTPARALLEL makes rule execute only once
-${RMD_DST} : ${RMD_SRC}
-       @bin/knit_lessons.sh ${RMD_SRC}
+_episodes/%.md: _episodes_rmd/%.Rmd
+       @bin/knit_lessons.sh $< $@
 
 ## lesson-check     : validate lesson Markdown.
 lesson-check : lesson-fixme
-       @bin/lesson_check.py -s . -p ${PARSER} -r _includes/links.md
+       @${PYTHON} bin/lesson_check.py -s . -p ${PARSER} -r _includes/links.md
 
 ## lesson-check-all : validate lesson Markdown, checking line lengths and trailing whitespace.
 lesson-check-all :
-       @bin/lesson_check.py -s . -p ${PARSER} -r _includes/links.md -l -w --permissive
+       @${PYTHON} bin/lesson_check.py -s . -p ${PARSER} -r _includes/links.md -l -w --permissive
 
 ## unittest         : run unit tests on checking tools.
 unittest :
-       @bin/test_lesson_check.py
+       @${PYTHON} bin/test_lesson_check.py
 
 ## lesson-files     : show expected names of generated files for debugging.
 lesson-files :