Sync styles first (#494)

[rnaseq-cwl-training.git] / Makefile

diff --git a/Makefile b/Makefile
index 1407962ca27c9a35a384463d41647f304bad7e9b..d35f08f59925c4f4cb352f424781878ed8b496fd 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -32,7 +32,7 @@ endif
 
 
 # Controls
-.PHONY : commands clean files install-rmd-deps
+.PHONY : commands clean files
 
 # Default target
 .DEFAULT_GOAL := commands
@@ -93,7 +93,7 @@ workshop-check :
 ## III. Commands specific to lesson websites
 ## =================================================
 
-.PHONY : lesson-check lesson-md lesson-files lesson-fixme
+.PHONY : lesson-check lesson-md lesson-files lesson-fixme install-rmd-deps
 
 # RMarkdown files
 RMD_SRC = $(wildcard _episodes_rmd/??-*.Rmd)
@@ -121,12 +121,12 @@ HTML_DST = \
 
 ## * install-rmd-deps : Install R packages dependencies to build the RMarkdown lesson
 install-rmd-deps:
-       Rscript -e 'source("bin/dependencies.R"); install_dependencies(identify_dependencies())'
+       @${SHELL} bin/install_r_deps.sh
 
 ## * lesson-md        : convert Rmarkdown files to markdown
 lesson-md : ${RMD_DST}
 
-_episodes/%.md: _episodes_rmd/%.Rmd install-rmd-dependencies
+_episodes/%.md: _episodes_rmd/%.Rmd install-rmd-deps
        @mkdir -p _episodes
        @bin/knit_lessons.sh $< $@