GitHub Actions: check lesson template (#489)

[rnaseq-cwl-training.git] / Makefile

diff --git a/Makefile b/Makefile
index b585662ce1d299f5bca302fb53c12a623f9ea536..1407962ca27c9a35a384463d41647f304bad7e9b 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -32,7 +32,7 @@ endif
 
 
 # Controls
-.PHONY : commands clean files
+.PHONY : commands clean files install-rmd-deps
 
 # Default target
 .DEFAULT_GOAL := commands
@@ -119,10 +119,15 @@ HTML_DST = \
   $(patsubst _extras/%.md,${DST}/%/index.html,$(sort $(wildcard _extras/*.md))) \
   ${DST}/license/index.html
 
+## * install-rmd-deps : Install R packages dependencies to build the RMarkdown lesson
+install-rmd-deps:
+       Rscript -e 'source("bin/dependencies.R"); install_dependencies(identify_dependencies())'
+
 ## * lesson-md        : convert Rmarkdown files to markdown
 lesson-md : ${RMD_DST}
 
-_episodes/%.md: _episodes_rmd/%.Rmd
+_episodes/%.md: _episodes_rmd/%.Rmd install-rmd-dependencies
+       @mkdir -p _episodes
        @bin/knit_lessons.sh $< $@
 
 ## * lesson-check     : validate lesson Markdown