Remove software carpentries logo

[rnaseq-cwl-training.git] / Makefile

diff --git a/Makefile b/Makefile
index d35f08f59925c4f4cb352f424781878ed8b496fd..09d2d3414e510b0aa6ba60959bbd328bf04979df 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -96,7 +96,7 @@ workshop-check :
 .PHONY : lesson-check lesson-md lesson-files lesson-fixme install-rmd-deps
 
 # RMarkdown files
-RMD_SRC = $(wildcard _episodes_rmd/??-*.Rmd)
+RMD_SRC = $(wildcard _episodes_rmd/*.Rmd)
 RMD_DST = $(patsubst _episodes_rmd/%.Rmd,_episodes/%.md,$(RMD_SRC))
 
 # Lesson source files in the order they appear in the navigation menu.
@@ -107,7 +107,8 @@ MARKDOWN_SRC = \
   $(sort $(wildcard _episodes/*.md)) \
   reference.md \
   $(sort $(wildcard _extras/*.md)) \
-  LICENSE.md
+  LICENSE.md \
+  CONTRIBUTING.md
 
 # Generated lesson files in the order they appear in the navigation menu.
 HTML_DST = \
@@ -115,7 +116,7 @@ HTML_DST = \
   ${DST}/conduct/index.html \
   ${DST}/setup/index.html \
   $(patsubst _episodes/%.md,${DST}/%/index.html,$(sort $(wildcard _episodes/*.md))) \
-  ${DST}/reference/index.html \
+  ${DST}/reference.html \
   $(patsubst _extras/%.md,${DST}/%/index.html,$(sort $(wildcard _extras/*.md))) \
   ${DST}/license/index.html