From e5a88e762454a14917af652f7b76483d551f87fa Mon Sep 17 00:00:00 2001 From: Tom Clegg Date: Mon, 2 Nov 2020 00:55:55 -0500 Subject: [PATCH] Propagate filters to container. Arvados-DCO-1.1-Signed-off-by: Tom Clegg --- exportnumpy.go | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/exportnumpy.go b/exportnumpy.go index 5873d83940..fdedf69816 100644 --- a/exportnumpy.go +++ b/exportnumpy.go @@ -72,7 +72,16 @@ func (cmd *exportNumpy) RunCommand(prog string, args []string, stdin io.Reader, if err != nil { return 1 } - runner.Args = []string{"export-numpy", "-local=true", fmt.Sprintf("-one-hot=%v", *onehot), "-i", *inputFilename, "-o", "/mnt/output/matrix.npy", "-output-annotations", "/mnt/output/annotations.tsv", "-output-onehot2tilevar", "/mnt/output/onehot2tilevar.tsv"} + runner.Args = []string{"export-numpy", "-local=true", + fmt.Sprintf("-one-hot=%v", *onehot), + "-i", *inputFilename, + "-o", "/mnt/output/matrix.npy", + "-output-annotations", "/mnt/output/annotations.tsv", + "-output-onehot2tilevar", "/mnt/output/onehot2tilevar.tsv", + "-max-variants", fmt.Sprintf("%d", cmd.filter.MaxVariants), + "-min-coverage", fmt.Sprintf("%f", cmd.filter.MinCoverage), + "-max-tag", fmt.Sprintf("%d", cmd.filter.MaxTag), + } var output string output, err = runner.Run() if err != nil { -- 2.39.5