From bd8f5f710e80850a2bcee4bcf031fd95b54d6782 Mon Sep 17 00:00:00 2001 From: Tom Clegg Date: Wed, 21 Oct 2020 23:43:08 -0400 Subject: [PATCH 1/1] Fix chr pos after chr1. Arvados-DCO-1.1-Signed-off-by: Tom Clegg --- export.go | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/export.go b/export.go index 2c51ff3eb9..7d3e2ec11c 100644 --- a/export.go +++ b/export.go @@ -271,8 +271,8 @@ func (cmd *exporter) export(out, bedout io.Writer, librdr io.Reader, taglen int, return fmt.Errorf("%d needed tiles are missing from library", len(missing)) } - refpos := 0 for _, seqname := range seqnames { + refpos := 0 variantAt := map[int][]hgvs.Variant{} // variantAt[chromOffset][genomeIndex*2+phase] for refstep, libref := range refseq[seqname] { reftile := tileVariant[libref] -- 2.30.2