From 90ea0b4b5fadef4bdbe35238ea32e1ebd8d32bd3 Mon Sep 17 00:00:00 2001
From: Tom Clegg <tom@tomclegg.ca>
Date: Tue, 14 Jan 2020 11:19:31 -0500
Subject: [PATCH] Fix docker buffering everything.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
---
 gvcf2numpy.go | 1 +
 1 file changed, 1 insertion(+)

diff --git a/gvcf2numpy.go b/gvcf2numpy.go
index 11f7d40b6b..073eb70df7 100644
--- a/gvcf2numpy.go
+++ b/gvcf2numpy.go
@@ -144,6 +144,7 @@ func (cmd *gvcf2numpy) tileGVCF(tilelib *tileLibrary, infile string, phase int)
 	if out, err := exec.Command("docker", "image", "ls", "-q", "lightning-runtime").Output(); err == nil && len(out) > 0 {
 		args = append([]string{
 			"docker", "run", "--rm",
+			"--log-driver=none",
 			"--volume=" + infile + ":" + infile + ":ro",
 			"--volume=" + infile + ".csi:" + infile + ".csi:ro",
 			"--volume=" + cmd.refFile + ":" + cmd.refFile + ":ro",
-- 
2.39.5