From 76147a343eaedc19193f62148845085a464b057a Mon Sep 17 00:00:00 2001 From: Tom Clegg Date: Mon, 1 Nov 2021 10:41:01 -0400 Subject: [PATCH] Update slice-numpy test. refs #17763 Arvados-DCO-1.1-Signed-off-by: Tom Clegg --- slice_test.go | 11 +++++++++++ testdata/pipeline1/input2.1.fasta | 2 +- testdata/pipeline1/input2.2.fasta | 4 ++-- 3 files changed, 14 insertions(+), 3 deletions(-) diff --git a/slice_test.go b/slice_test.go index 532b7bb2e5..42bceee9b8 100644 --- a/slice_test.go +++ b/slice_test.go @@ -112,4 +112,15 @@ func (s *sliceSuite) TestImportAndSlice(c *check.C) { } { c.Check(string(annotations), check.Matches, "(?ms).*"+s+".*") } + + annotations, err = ioutil.ReadFile(npydir + "/matrix.0002.annotations.csv") + c.Assert(err, check.IsNil) + c.Logf("%s", annotations) + for _, s := range []string{ + ",2,chr2:g.1_3delinsAAA", + ",2,chr2:g.125_127delinsAAA", + ",4,chr2:g.125_127delinsAAA", + } { + c.Check(string(annotations), check.Matches, "(?ms).*"+s+".*") + } } diff --git a/testdata/pipeline1/input2.1.fasta b/testdata/pipeline1/input2.1.fasta index 4b2b537e0f..a0798ca734 100644 --- a/testdata/pipeline1/input2.1.fasta +++ b/testdata/pipeline1/input2.1.fasta @@ -11,7 +11,7 @@ tgatagccatcccgcacctagcgcacggaacttcgaccgatcccatattaacgtgtctcttatcctcccgctactgcgtg >chr2 tttttatagcagtagcggttgcgataatgcgcactaaggtggccataacttagccacacagactgcgacctcggtgtcaatctttaggcgatgactagtg gttattaataataacttatcatca -aaaccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa +AAAccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa gctctcaaaccttgtatttttctt atgtcctcgcttggattatggggactcgcagtaaatgacaaccgtgcccgctggccctggccggaccgcgcgtccgtaagtagcgatcgagtcctgcagt aaaactgatccaaaaaaaatacaa diff --git a/testdata/pipeline1/input2.2.fasta b/testdata/pipeline1/input2.2.fasta index 3cb4412cab..5e5b93d77e 100644 --- a/testdata/pipeline1/input2.2.fasta +++ b/testdata/pipeline1/input2.2.fasta @@ -9,9 +9,9 @@ aaggtttatattcagtcgaaatggacgggtcccgaacttgcacggacctaacgggactcgcctttcgtaataaccgaacc cctcccgagccgagccacccgtca tgatagccatcccgcacctagcgcacggaacttcgaccgatcccatattaacgtgtctcttatcctcccgctactgcgtgccttgccactcgtttactat >chr2 -aaattatagcagtagcggttgcgataatgcgcactaaggtggccataacttagccacacagactgcgacctcggtgtcaatctttaggcgatgactagtg +AAAttatagcagtagcggttgcgataatgcgcactaaggtggccataacttagccacacagactgcgacctcggtgtcaatctttaggcgatgactagtg gttattaataataacttatcatca -aaaccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa +AAAccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa gctctcaaaccttgtatttttctt atgtcctcgcttggattatggggactcgcagtaaatgacaaccgtgcccgctggccctggccggaccgcgcgtccgtaagtagcgatcgagtcctgcagt aaaactgatccaaaaaaaatacaa -- 2.30.2