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Mention undiffable variants in annotations, write -2 in hgvs matrix.
[lightning.git]
/
arvados.go
2021-11-24
Tom Clegg
Use non-preemptible instances.
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2021-10-08
Tom Clegg
Accept PDH on command line.
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2021-10-06
Tom Clegg
Use arvados client for /any/path/$id/, not just /mnt...
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2021-09-25
Tom Clegg
Scale keep cache to 2*(openfiles+1).
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2021-08-06
Tom Clegg
Add copyright headers.
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2021-06-15
Tom Clegg
Fixup multiple-file reading.
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2021-06-15
Tom Clegg
Add "flake" command (read, tidy, write).
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2021-06-14
Tom Clegg
Write hgvs-based numpy matrix.
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2021-03-24
Tom Clegg
Export selected regions.
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2021-03-01
Tom Clegg
Ask for preemptible instances.
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2021-02-08
Tom Clegg
Move command line tool to subdir.
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2021-01-14
Tom Clegg
Fix log message.
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2020-12-18
Tom Clegg
Share a single sitefs for multiple arvados files.
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2020-12-08
Tom Clegg
Save git version in lightning binary collection name...
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2020-12-02
Tom Clegg
Improve import and vcf2fasta performance.
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2020-11-25
Tom Clegg
Share CR refresh throttle when running multiple containers.
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2020-11-24
Tom Clegg
Concurrent-batches mode for vcf2fasta and import.
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2020-11-22
Tom Clegg
Let caller set container output name.
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2020-09-11
Tom Clegg
Show container mem stats.
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2020-04-21
Tom Clegg
Don't log token in websocket url.
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2020-04-06
Tom Clegg
Fix up websocket locking.
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2020-04-06
Tom Clegg
Exit non-zero if container is cancelled.
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2020-04-06
Tom Clegg
Output to arvados storage instead of staging on local...
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2020-03-11
Tom Clegg
Refactor websocket listener.
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2020-03-11
Tom Clegg
Fix unchecked error.
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2020-03-10
Tom Clegg
Container request priority flag.
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2020-03-05
Tom Clegg
Filter logs by container on client side of ws connection.
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2020-03-05
Tom Clegg
Less verbose logging.
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2020-03-05
Tom Clegg
Upgrade deps.
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2020-03-05
Tom Clegg
Fix up log/event handling.
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2020-03-05
Tom Clegg
I/O pipeline, show arvados container logs.
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2020-03-04
Tom Clegg
Add plot subcommand.
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2020-03-04
Tom Clegg
Tidy log messages.
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2020-03-03
Tom Clegg
Add pca subcommand.
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2020-03-03
Tom Clegg
Run "filter" and "export" in arvados containers.
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2020-03-02
Tom Clegg
Run "import" in arvados container.
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