git.arvados.org - lightning.git/history

4 days ago	Tom Clegg	Accept double file extensions (sample-id.1.fa.fa.gz).	blob \| commitdiff \| raw
2023-11-09	Alex Coleman	Merge branch '20765-moving-gvcf-regions'	blob \| commitdiff \| raw \| diff to current
2023-10-27	Tom Clegg	Merge branch '21139-import-mem'	blob \| commitdiff \| raw \| diff to current
2023-10-26	Tom Clegg	21139: Reduce memory usage in tiling. 21139-import-mem	blob \| commitdiff \| raw \| diff to current
2021-10-06	Tom Clegg	Save all ref tile data in slice 0.	blob \| commitdiff \| raw \| diff to current
2021-08-06	Tom Clegg	Add copyright headers.	blob \| commitdiff \| raw \| diff to current
2021-05-07	Tom Clegg	Export hgvs-onehot.	blob \| commitdiff \| raw \| diff to current
2021-03-01	Tom Clegg	Bump import RAM.	blob \| commitdiff \| raw \| diff to current
2021-03-01	Tom Clegg	Reduce import RAM.	blob \| commitdiff \| raw \| diff to current
2021-02-08	Tom Clegg	Move command line tool to subdir.	blob \| commitdiff \| raw \| diff to current
2020-12-18	Tom Clegg	Bump import memory.	blob \| commitdiff \| raw \| diff to current
2020-12-02	Tom Clegg	Fix deadlock on error.	blob \| commitdiff \| raw \| diff to current
2020-12-02	Tom Clegg	Improve import and vcf2fasta performance.	blob \| commitdiff \| raw \| diff to current
2020-11-24	Tom Clegg	Concurrent-batches mode for vcf2fasta and import.	blob \| commitdiff \| raw \| diff to current
2020-11-23	Tom Clegg	Propagate -match-chromosome arg to container.	blob \| commitdiff \| raw \| diff to current
2020-11-19	Tom Clegg	Configurable chromosome name pattern.	blob \| commitdiff \| raw \| diff to current
2020-11-13	Tom Clegg	Gzip gob files.	blob \| commitdiff \| raw \| diff to current
2020-11-12	Tom Clegg	When not saving incomplete tilevars, still save hashes...	blob \| commitdiff \| raw \| diff to current
2020-10-26	Tom Clegg	Better series palette.	blob \| commitdiff \| raw \| diff to current
2020-10-25	Tom Clegg	Plot import stats.	blob \| commitdiff \| raw \| diff to current
2020-10-25	Tom Clegg	Write import stats to stats.json.	blob \| commitdiff \| raw \| diff to current
2020-10-22	Tom Clegg	Fix divide by zero.	blob \| commitdiff \| raw \| diff to current
2020-10-14	Tom Clegg	Export HGVS.	blob \| commitdiff \| raw \| diff to current
2020-10-12	Tom Clegg	Fix log message.	blob \| commitdiff \| raw \| diff to current
2020-10-08	Tom Clegg	Allow importing all-hom (reference) data from single...	blob \| commitdiff \| raw \| diff to current
2020-10-07	Tom Clegg	When writing library, write tags too.	blob \| commitdiff \| raw \| diff to current
2020-09-25	Tom Clegg	Option to treat tiles with no-calls as regular tiles.	blob \| commitdiff \| raw \| diff to current
2020-09-25	Tom Clegg	Option to output tile library when importing.	blob \| commitdiff \| raw \| diff to current
2020-04-24	Tom Clegg	Log # duplicate tags.	blob \| commitdiff \| raw \| diff to current
2020-04-23	Tom Clegg	Log out-of-order tags if -loglevel=debug.	blob \| commitdiff \| raw \| diff to current
2020-04-08	Tom Clegg	More memory for import.	blob \| commitdiff \| raw \| diff to current
2020-04-06	Tom Clegg	Propagate skip-ooo flag to container.	blob \| commitdiff \| raw \| diff to current
2020-04-06	Tom Clegg	Option to skip/ignore out-of-order tags.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Container request priority flag.	blob \| commitdiff \| raw \| diff to current
2020-03-05	Tom Clegg	Use more tiling workers than NumCPU.	blob \| commitdiff \| raw \| diff to current
2020-03-05	Tom Clegg	Less verbose logging.	blob \| commitdiff \| raw \| diff to current
2020-03-05	Tom Clegg	I/O pipeline, show arvados container logs.	blob \| commitdiff \| raw \| diff to current
2020-03-04	Tom Clegg	Fix input arg in export.	blob \| commitdiff \| raw \| diff to current
2020-03-03	Tom Clegg	Run "filter" and "export" in arvados containers.	blob \| commitdiff \| raw \| diff to current
2020-03-02	Tom Clegg	Run "import" in arvados container.	blob \| commitdiff \| raw \| diff to current
2020-03-02	Tom Clegg	Add import -o argument.	blob \| commitdiff \| raw \| diff to current
2020-03-02	Tom Clegg	Don't require reference data when all inputs are fasta.	blob \| commitdiff \| raw \| diff to current
2020-02-04	Tom Clegg	Split gvcf2numpy command into import and export-numpy.	blob \| commitdiff \| raw \| diff to current

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