git.arvados.org - lightning.git/history

2021-12-04	Tom Clegg	Call 2-base deletion-insertion as two adjacent SNPs.	blob \| commitdiff \| raw
2021-08-11	Tom Clegg	Export hgvs one-hot numpy: -1 for missing / low quality...	blob \| commitdiff \| raw \| diff to current
2021-08-06	Tom Clegg	Add copyright headers.	blob \| commitdiff \| raw \| diff to current
2021-07-30	Tom Clegg	Use tsv filename when using tab separator.	blob \| commitdiff \| raw \| diff to current
2021-07-13	Tom Clegg	Fix up VCF format.	blob \| commitdiff \| raw \| diff to current
2021-07-12	Tom Clegg	Separate pvcf/vcf output.	blob \| commitdiff \| raw \| diff to current
2021-07-08	Tom Clegg	Option to export one vcf/csv file per chromosome.	blob \| commitdiff \| raw \| diff to current
2021-06-14	Tom Clegg	Write hgvs-based numpy matrix.	blob \| commitdiff \| raw \| diff to current
2021-03-24	Tom Clegg	Export selected regions.	blob \| commitdiff \| raw \| diff to current
2021-02-08	Tom Clegg	Move command line tool to subdir.	blob \| commitdiff \| raw \| diff to current
2020-11-25	Tom Clegg	Export labels.csv with numpy array.	blob \| commitdiff \| raw \| diff to current
2020-11-12	Tom Clegg	When not saving incomplete tilevars, still save hashes...	blob \| commitdiff \| raw \| diff to current
2020-11-02	Tom Clegg	Omit refname field in annotation if only one ref exists.	blob \| commitdiff \| raw \| diff to current
2020-10-28	Tom Clegg	Export tile annotations.	blob \| commitdiff \| raw \| diff to current
2020-10-25	Tom Clegg	Write import stats to stats.json.	blob \| commitdiff \| raw \| diff to current
2020-10-22	Tom Clegg	Fix coverage score.	blob \| commitdiff \| raw \| diff to current
2020-10-22	Tom Clegg	Update test.	blob \| commitdiff \| raw \| diff to current
2020-10-21	Tom Clegg	Handle N in ref.	blob \| commitdiff \| raw \| diff to current
2020-10-21	Tom Clegg	Export bed file.	blob \| commitdiff \| raw \| diff to current
2020-10-20	Tom Clegg	Export VCF-ish.	blob \| commitdiff \| raw \| diff to current
2020-10-14	Tom Clegg	Export HGVS.	blob \| commitdiff \| raw \| diff to current
2020-10-12	Tom Clegg	Add merge command.	blob \| commitdiff \| raw \| diff to current
2020-10-08	Tom Clegg	Allow importing all-hom (reference) data from single...	blob \| commitdiff \| raw \| diff to current

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