From: Jiayong Li <jli@curii.com>
Date: Fri, 27 Jan 2023 19:37:08 +0000 (+0000)
Subject: Change resource requirement of gvcf2fasta and imputation
X-Git-Url: https://git.arvados.org/lightning.git/commitdiff_plain/a9ed5889381ad52275eed55d68c15fd6ae19a451?ds=inline

Change resource requirement of gvcf2fasta and imputation

refs #19868

Arvados-DCO-1.1-Signed-off-by: Jiayong Li <jli@curii.com>
---

diff --git a/cwl/gvcf2fasta/concat-get_bed_varonlyvcf.cwl b/cwl/gvcf2fasta/concat-get_bed_varonlyvcf.cwl
index 5ddd3f3bf1..70ad46c654 100644
--- a/cwl/gvcf2fasta/concat-get_bed_varonlyvcf.cwl
+++ b/cwl/gvcf2fasta/concat-get_bed_varonlyvcf.cwl
@@ -12,7 +12,7 @@ hints:
     dockerPull: vcfutil
   ResourceRequirement:
     ramMin: 5000
-    outdirMin: 40000
+    tmpdirMin: 2000
 inputs:
   sampleid:
     type: string
diff --git a/cwl/imputation/bcftools-concat.cwl b/cwl/imputation/bcftools-concat.cwl
index 88092506c2..6e62e72b9a 100644
--- a/cwl/imputation/bcftools-concat.cwl
+++ b/cwl/imputation/bcftools-concat.cwl
@@ -12,7 +12,7 @@ hints:
   ResourceRequirement:
     coresMin: 2
     ramMin: 5000
-    tmpdirMin: 10000
+    tmpdirMin: 2000
 inputs:
   sample: string
   vcfs: