Update example.
authorTom Clegg <tom@tomclegg.ca>
Thu, 29 Oct 2020 06:16:58 +0000 (02:16 -0400)
committerTom Clegg <tom@tomclegg.ca>
Thu, 29 Oct 2020 06:16:58 +0000 (02:16 -0400)
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

example-su92l-1kg.sh

index 4e6082353afaba962676cf7537354984b42013b8..cf5b2b95cf298a0ba26b7b0f79215f002b39d195 100755 (executable)
@@ -23,6 +23,8 @@ ref37_lib=$(lightning  import       -project ${project} -priority ${priority} -t
 # ref37_lib=su92l-4zz18-vnhlv3g6yp1azls/library.gob
 # 539s
 
+ref38_lib=$(lightning  import       -project ${project} -priority ${priority} -tag-library ${tagset} -skip-ooo=true -output-tiles=true -include-no-calls ${ref_fa}) ; echo ref38_lib=${ref38_lib}
+
 unfiltered=$(lightning import       -project ${project} -priority ${priority} -tag-library ${tagset} -skip-ooo=true -output-tiles=true ${fasta})       ; echo unfiltered=${unfiltered}
 # unfiltered=su92l-4zz18-mz3546bib6oj1gg/library.gob