git.arvados.org - lightning.git/commit

author	Tom Clegg <tom@curii.com>
	Thu, 11 Apr 2024 18:16:52 +0000 (14:16 -0400)
committer	Tom Clegg <tom@curii.com>
	Thu, 11 Apr 2024 18:16:52 +0000 (14:16 -0400)
commit	ffbcef24f540e5840fb77c487a5fb46fbb9da133
tree	7a5509c21d20b30744a422ecbfe51dfcce5a66ff	tree \| snapshot
parent	2a8986eef484d641f89a09622dd5f93cedc05e89	commit \| diff

21543: Move Go code into go-lightning subdir.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

69 files changed:

.licenseignore		diff \| blob \| history
docker/lightning/Dockerfile		diff \| blob \| history
example-su92l-1kg.sh	[deleted file]	blob \| history
go-lightning/Makefile	[moved from Makefile with 100% similarity]	blob \| history
go-lightning/anno2vcf.go	[moved from anno2vcf.go with 100% similarity]	blob \| history
go-lightning/annotate.go	[moved from annotate.go with 99% similarity]	diff \| blob \| history
go-lightning/arvados.go	[moved from arvados.go with 100% similarity]	blob \| history
go-lightning/batchargs.go	[moved from batchargs.go with 100% similarity]	blob \| history
go-lightning/chisquare.go	[moved from chisquare.go with 100% similarity]	blob \| history
go-lightning/chisquare_test.go	[moved from chisquare_test.go with 100% similarity]	blob \| history
go-lightning/choosesamples.go	[moved from choosesamples.go with 100% similarity]	blob \| history
go-lightning/cmd.go	[moved from cmd.go with 100% similarity]	blob \| history
go-lightning/diff.go	[moved from diff.go with 97% similarity]	diff \| blob \| history
go-lightning/diff_test.go	[moved from diff_test.go with 100% similarity]	blob \| history
go-lightning/dump.go	[moved from dump.go with 100% similarity]	blob \| history
go-lightning/dumpgob.go	[moved from dumpgob.go with 100% similarity]	blob \| history
go-lightning/export.go	[moved from export.go with 99% similarity]	diff \| blob \| history
go-lightning/export_test.go	[moved from export_test.go with 100% similarity]	blob \| history
go-lightning/exportnumpy.go	[moved from exportnumpy.go with 99% similarity]	diff \| blob \| history
go-lightning/exportnumpy_test.go	[moved from exportnumpy_test.go with 100% similarity]	blob \| history
go-lightning/filter.go	[moved from filter.go with 100% similarity]	blob \| history
go-lightning/flake.go	[moved from flake.go with 100% similarity]	blob \| history
go-lightning/glm.go	[moved from glm.go with 100% similarity]	blob \| history
go-lightning/glm_test.go	[moved from glm_test.go with 100% similarity]	blob \| history
go-lightning/go.mod	[moved from go.mod with 97% similarity]	diff \| blob \| history
go-lightning/go.sum	[moved from go.sum with 100% similarity]	blob \| history
go-lightning/gob.go	[moved from gob.go with 100% similarity]	blob \| history
go-lightning/hgvs/diff.go	[moved from hgvs/diff.go with 100% similarity]	blob \| history
go-lightning/hgvs/diff_test.go	[moved from hgvs/diff_test.go with 100% similarity]	blob \| history
go-lightning/import.go	[moved from import.go with 100% similarity]	blob \| history
go-lightning/lightning/main.go	[moved from lightning/main.go with 74% similarity]	diff \| blob \| history
go-lightning/lis.go	[moved from lis.go with 100% similarity]	blob \| history
go-lightning/lis_test.go	[moved from lis_test.go with 100% similarity]	blob \| history
go-lightning/manhattan.go	[moved from manhattan.go with 100% similarity]	blob \| history
go-lightning/manhattan.py	[moved from manhattan.py with 100% similarity]	blob \| history
go-lightning/mask.go	[moved from mask.go with 100% similarity]	blob \| history
go-lightning/mask_test.go	[moved from mask_test.go with 100% similarity]	blob \| history
go-lightning/merge.go	[moved from merge.go with 100% similarity]	blob \| history
go-lightning/numpycomvar.go	[moved from numpycomvar.go with 100% similarity]	blob \| history
go-lightning/pca_plot.go	[moved from pca_plot.go with 100% similarity]	blob \| history
go-lightning/pca_plot.py	[moved from pca_plot.py with 100% similarity]	blob \| history
go-lightning/pipeline_test.go	[moved from pipeline_test.go with 100% similarity]	blob \| history
go-lightning/profile.go	[moved from profile.go with 100% similarity]	blob \| history
go-lightning/ref2genome.go	[moved from ref2genome.go with 100% similarity]	blob \| history
go-lightning/slice.go	[moved from slice.go with 100% similarity]	blob \| history
go-lightning/slice_test.go	[moved from slice_test.go with 100% similarity]	blob \| history
go-lightning/slicenumpy.go	[moved from slicenumpy.go with 99% similarity]	diff \| blob \| history
go-lightning/stats.go	[moved from stats.go with 100% similarity]	blob \| history
go-lightning/taglib.go	[moved from taglib.go with 100% similarity]	blob \| history
go-lightning/taglib_test.go	[moved from taglib_test.go with 100% similarity]	blob \| history
go-lightning/testdata/a.1.fasta	[moved from testdata/a.1.fasta with 100% similarity]	blob \| history
go-lightning/testdata/a.2.fasta	[moved from testdata/a.2.fasta with 100% similarity]	blob \| history
go-lightning/testdata/pipeline1/input1.1.fasta	[moved from testdata/pipeline1/input1.1.fasta with 100% similarity]	blob \| history
go-lightning/testdata/pipeline1/input1.2.fasta	[moved from testdata/pipeline1/input1.2.fasta with 100% similarity]	blob \| history
go-lightning/testdata/pipeline1/input2.1.fasta	[moved from testdata/pipeline1/input2.1.fasta with 100% similarity]	blob \| history
go-lightning/testdata/pipeline1/input2.2.fasta	[moved from testdata/pipeline1/input2.2.fasta with 100% similarity]	blob \| history
go-lightning/testdata/ref.fasta	[moved from testdata/ref.fasta with 100% similarity]	blob \| history
go-lightning/testdata/spanningtile/input1.1.fasta	[moved from testdata/spanningtile/input1.1.fasta with 100% similarity]	blob \| history
go-lightning/testdata/spanningtile/input1.2.fasta	[moved from testdata/spanningtile/input1.2.fasta with 100% similarity]	blob \| history
go-lightning/testdata/spanningtile/input2.1.fasta	[moved from testdata/spanningtile/input2.1.fasta with 100% similarity]	blob \| history
go-lightning/testdata/spanningtile/input2.2.fasta	[moved from testdata/spanningtile/input2.2.fasta with 100% similarity]	blob \| history
go-lightning/testdata/tags	[moved from testdata/tags with 100% similarity]	blob \| history
go-lightning/testdata/tinyref.fasta	[moved from testdata/tinyref.fasta with 100% similarity]	blob \| history
go-lightning/throttle.go	[moved from throttle.go with 100% similarity]	blob \| history
go-lightning/tilelib.go	[moved from tilelib.go with 100% similarity]	blob \| history
go-lightning/tilelib_test.go	[moved from tilelib_test.go with 100% similarity]	blob \| history
go-lightning/tilestats.go	[moved from tilestats.go with 100% similarity]	blob \| history
go-lightning/vcf2fasta.go	[moved from vcf2fasta.go with 100% similarity]	blob \| history
go-lightning/version.sh	[moved from version.sh with 100% similarity]	blob \| history

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