X-Git-Url: https://git.arvados.org/lightning.git/blobdiff_plain/d5a1283079b321f845eab7f5e9bacdf2cf859a5f..98f787f9bbc8fbcb94b9b8c9cb464db03efefdd4:/cwl/lightning/yml/fasta2numpy-wf-bugfix-test.yml

diff --git a/cwl/lightning/yml/fasta2numpy-wf-bugfix-test.yml b/cwl/lightning/yml/fasta2numpy-wf-bugfix-test.yml
new file mode 100644
index 0000000000..359b0540e5
--- /dev/null
+++ b/cwl/lightning/yml/fasta2numpy-wf-bugfix-test.yml
@@ -0,0 +1,63 @@
+# Copyright (C) The Lightning Authors. All rights reserved.
+#
+# SPDX-License-Identifier: AGPL-3.0
+
+tagset:
+  class: File
+  location: keep:c37923fd267415556962d5c535e9b075+110/tagset.fa.gz
+refdir:
+  class: Directory
+  location: keep:ee5b90cf2d5f3573e6d455ab56e15cdf+761
+batchsize: 12
+matchgenome: ""
+threads: 10
+mergeoutput: "false"
+expandregions: 0
+phenotypesnofamilydir:
+  class: Directory
+  location: keep:9b76b33c948bba77f2bf58f915cff9f4+120
+phenotypesdir:
+  class: Directory
+  location: keep:8508667def6057f0bbf0ab4f751d8b05+205
+trainingsetsize: 0.8
+randomseed: 0
+pcacomponents: 10
+readmeinfo: ["2023-08-27", "testing for bugfix, called using VCPA1.1 pipeline", "https://workbench.2xpu4.arvadosapi.com/projects/2xpu4-j7d0g-50i3pwf3a16ubbf"]
+chrs:
+  - "chr1"
+  - "chr2"
+  - "chr3"
+  - "chr4"
+  - "chr5"
+  - "chr6"
+  - "chr7"
+  - "chr8"
+  - "chr9"
+  - "chr10"
+  - "chr11"
+  - "chr12"
+  - "chr13"
+  - "chr14"
+  - "chr15"
+  - "chr16"
+  - "chr17"
+  - "chr18"
+  - "chr19"
+  - "chr20"
+  - "chr21"
+  - "chr22"
+  - "chrX"
+  - "chrY"
+snpeffdatadir:
+  class: Directory
+  location: keep:66c966928931de252274772c76f73025+52054
+genomeversion: "GRCh38.86"
+dbsnp:
+  class: File
+  location: keep:a088b297d614e4c63cbb23f8ad404438+12313/00-All.vcf.gz_renamed.bcf
+gnomaddir:
+  class: Directory
+  location: keep:c6a8fc877e85d73ac5b165e2d7367e26+675135
+fastadirs:
+  - class: Directory
+    location: keep:7f3ba4ea8d7504ce040da01507c71f6f+138479