X-Git-Url: https://git.arvados.org/lightning.git/blobdiff_plain/ba5dea916505730ed44af0655c820bd3d767be1e..HEAD:/tilelib_test.go

diff --git a/tilelib_test.go b/tilelib_test.go
deleted file mode 100644
index 0e7edd6759..0000000000
--- a/tilelib_test.go
+++ /dev/null
@@ -1,136 +0,0 @@
-package main
-
-import (
-	"bytes"
-	"strings"
-
-	"gopkg.in/check.v1"
-)
-
-type tilelibSuite struct {
-	tag    []string
-	taglib tagLibrary
-}
-
-var _ = check.Suite(&tilelibSuite{})
-
-func (s *tilelibSuite) SetUpSuite(c *check.C) {
-	fasta := `>0000.00
-ggagaactgtgctccgccttcaga
-acacatgctagcgcgtcggggtgg
-gactctagcagagtggccagccac
-cctcccgagccgagccacccgtca
-gttattaataataacttatcatca
-`
-	err := s.taglib.Load(bytes.NewBufferString(fasta))
-	c.Assert(err, check.IsNil)
-	for _, seq := range strings.Split(fasta, "\n") {
-		if len(seq) > 0 && seq[0] != '>' {
-			s.tag = append(s.tag, seq+"\n")
-		}
-	}
-}
-
-func (s *tilelibSuite) TestSkipOOO(c *check.C) {
-	// tags appear in seq: 4, 0, 2 (but skipOOO is false)
-	tilelib := &tileLibrary{taglib: &s.taglib, skipOOO: false}
-	tseq, err := tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
-		s.tag[4]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[0]+
-		"cccccccccccccccccccc\n"+
-		s.tag[2]+
-		"\n"))
-	c.Assert(err, check.IsNil)
-	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{4, 1}, {0, 1}, {2, 1}}})
-
-	// tags appear in seq: 0, 1, 2 -> don't skip
-	tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true}
-	tseq, err = tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
-		s.tag[0]+
-		"cccccccccccccccccccc\n"+
-		s.tag[1]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[2]+
-		"\n"))
-	c.Assert(err, check.IsNil)
-	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {2, 1}}})
-
-	// tags appear in seq: 2, 3, 4 -> don't skip
-	tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true}
-	tseq, err = tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
-		s.tag[2]+
-		"cccccccccccccccccccc\n"+
-		s.tag[3]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[4]+
-		"\n"))
-	c.Assert(err, check.IsNil)
-	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{2, 1}, {3, 1}, {4, 1}}})
-
-	// tags appear in seq: 4, 0, 2 -> skip 4
-	tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true}
-	tseq, err = tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
-		s.tag[4]+
-		"cccccccccccccccccccc\n"+
-		s.tag[0]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[2]+
-		"\n"))
-	c.Assert(err, check.IsNil)
-	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {2, 1}}})
-
-	// tags appear in seq: 0, 2, 1 -> skip 2
-	tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true}
-	tseq, err = tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
-		s.tag[0]+
-		"cccccccccccccccccccc\n"+
-		s.tag[2]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[1]+
-		"\n"))
-	c.Assert(err, check.IsNil)
-	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}}})
-
-	// tags appear in seq: 0, 1, 1, 2 -> skip second tag1
-	tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true}
-	tseq, err = tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
-		s.tag[0]+
-		"cccccccccccccccccccc\n"+
-		s.tag[1]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[1]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[2]+
-		"\n"))
-	c.Assert(err, check.IsNil)
-	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {2, 1}}})
-
-	// tags appear in seq: 0, 1, 3, 0, 4 -> skip second tag0
-	tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true}
-	tseq, err = tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
-		s.tag[0]+
-		"cccccccccccccccccccc\n"+
-		s.tag[1]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[3]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[0]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[4]+
-		"\n"))
-	c.Assert(err, check.IsNil)
-	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {3, 1}, {4, 1}}})
-
-	// tags appear in seq: 0, 1, 3 -> don't skip
-	tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true}
-	tseq, err = tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
-		s.tag[0]+
-		"cccccccccccccccccccc\n"+
-		s.tag[1]+
-		"ggggggggggggggggggggggg\n"+
-		s.tag[3]+
-		"\n"))
-	c.Assert(err, check.IsNil)
-	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {3, 1}}})
-}