X-Git-Url: https://git.arvados.org/lightning.git/blobdiff_plain/7a447e0c90a4da2e2851abb078df2b233728f6b1..HEAD:/manhattan.go

diff --git a/manhattan.go b/manhattan.go
deleted file mode 100644
index 4ae44796be..0000000000
--- a/manhattan.go
+++ /dev/null
@@ -1,97 +0,0 @@
-// Copyright (C) The Lightning Authors. All rights reserved.
-//
-// SPDX-License-Identifier: AGPL-3.0
-
-package lightning
-
-import (
-	_ "embed"
-	"flag"
-	"fmt"
-	"io"
-	"os/exec"
-	"strings"
-
-	"git.arvados.org/arvados.git/sdk/go/arvados"
-)
-
-type manhattanPlot struct{}
-
-//go:embed manhattan.py
-var manhattanPy string
-
-func (cmd *manhattanPlot) RunCommand(prog string, args []string, stdin io.Reader, stdout, stderr io.Writer) int {
-	var err error
-	defer func() {
-		if err != nil {
-			fmt.Fprintf(stderr, "%s\n", err)
-		}
-	}()
-	flags := flag.NewFlagSet("", flag.ContinueOnError)
-	flags.SetOutput(stderr)
-	projectUUID := flags.String("project", "", "project `UUID` for output data")
-	inputDirectory := flags.String("i", "-", "input `directory` (output of slice-numpy -single-onehot)")
-	outputFilename := flags.String("o", "", "output `filename` (e.g., './plot.png')")
-	priority := flags.Int("priority", 500, "container request priority")
-	runlocal := flags.Bool("local", false, "run on local host (default: run in an arvados container)")
-	err = flags.Parse(args)
-	if err == flag.ErrHelp {
-		err = nil
-		return 0
-	} else if err != nil {
-		return 2
-	} else if flags.NArg() > 0 {
-		err = fmt.Errorf("errant command line arguments after parsed flags: %v", flags.Args())
-		return 2
-	}
-
-	runner := arvadosContainerRunner{
-		Name:        "lightning manhattan",
-		Client:      arvados.NewClientFromEnv(),
-		ProjectUUID: *projectUUID,
-		RAM:         4 << 30,
-		VCPUs:       1,
-		Priority:    *priority,
-		Mounts: map[string]map[string]interface{}{
-			"/manhattan.py": map[string]interface{}{
-				"kind":    "text",
-				"content": manhattanPy,
-			},
-		},
-	}
-	if !*runlocal {
-		err = runner.TranslatePaths(inputDirectory)
-		if err != nil {
-			return 1
-		}
-		*outputFilename = "/mnt/output/plot.png"
-	}
-	args = []string{
-		*inputDirectory,
-		*outputFilename,
-	}
-	if *runlocal {
-		if *outputFilename == "" {
-			fmt.Fprintln(stderr, "error: must specify -o filename.png in local mode (or try -help)")
-			return 1
-		}
-		cmd := exec.Command("python3", append([]string{"-"}, args...)...)
-		cmd.Stdin = strings.NewReader(manhattanPy)
-		cmd.Stdout = stdout
-		cmd.Stderr = stderr
-		err = cmd.Run()
-		if err != nil {
-			return 1
-		}
-		return 0
-	}
-	runner.Prog = "python3"
-	runner.Args = append([]string{"/manhattan.py"}, args...)
-	var output string
-	output, err = runner.Run()
-	if err != nil {
-		return 1
-	}
-	fmt.Fprintln(stdout, output+"/plot.png")
-	return 0
-}