X-Git-Url: https://git.arvados.org/lightning.git/blobdiff_plain/395c842444856a96a4216353a201ff5f42e3ef64..ceee3803f9b1ad3eef8b7abd45dc1327c062738c:/tilelib_test.go

diff --git a/tilelib_test.go b/tilelib_test.go
index 6d6ff5abb8..5801b9baf3 100644
--- a/tilelib_test.go
+++ b/tilelib_test.go
@@ -1,7 +1,12 @@
-package main
+// Copyright (C) The Lightning Authors. All rights reserved.
+//
+// SPDX-License-Identifier: AGPL-3.0
+
+package lightning
 
 import (
 	"bytes"
+	"regexp"
 	"strings"
 
 	"gopkg.in/check.v1"
@@ -32,6 +37,8 @@ gttattaataataacttatcatca
 }
 
 func (s *tilelibSuite) TestSkipOOO(c *check.C) {
+	matchAllChromosomes := regexp.MustCompile(".")
+
 	// tags appear in seq: 4, 0, 2 (but skipOOO is false)
 	tilelib := &tileLibrary{taglib: &s.taglib, skipOOO: false}
 	tseq, _, err := tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
@@ -40,7 +47,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
 		s.tag[0]+
 		"cccccccccccccccccccc\n"+
 		s.tag[2]+
-		"\n"))
+		"\n"), matchAllChromosomes, false)
 	c.Assert(err, check.IsNil)
 	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{4, 1}, {0, 1}, {2, 1}}})
 
@@ -52,7 +59,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
 		s.tag[1]+
 		"ggggggggggggggggggggggg\n"+
 		s.tag[2]+
-		"\n"))
+		"\n"), matchAllChromosomes, false)
 	c.Assert(err, check.IsNil)
 	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {2, 1}}})
 
@@ -64,7 +71,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
 		s.tag[3]+
 		"ggggggggggggggggggggggg\n"+
 		s.tag[4]+
-		"\n"))
+		"\n"), matchAllChromosomes, false)
 	c.Assert(err, check.IsNil)
 	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{2, 1}, {3, 1}, {4, 1}}})
 
@@ -76,7 +83,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
 		s.tag[0]+
 		"ggggggggggggggggggggggg\n"+
 		s.tag[2]+
-		"\n"))
+		"\n"), matchAllChromosomes, false)
 	c.Assert(err, check.IsNil)
 	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {2, 1}}})
 
@@ -88,7 +95,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
 		s.tag[2]+
 		"ggggggggggggggggggggggg\n"+
 		s.tag[1]+
-		"\n"))
+		"\n"), matchAllChromosomes, false)
 	c.Assert(err, check.IsNil)
 	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}}})
 
@@ -102,7 +109,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
 		s.tag[1]+
 		"ggggggggggggggggggggggg\n"+
 		s.tag[2]+
-		"\n"))
+		"\n"), matchAllChromosomes, false)
 	c.Assert(err, check.IsNil)
 	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {2, 1}}})
 
@@ -118,7 +125,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
 		s.tag[0]+
 		"ggggggggggggggggggggggg\n"+
 		s.tag[4]+
-		"\n"))
+		"\n"), matchAllChromosomes, false)
 	c.Assert(err, check.IsNil)
 	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {3, 1}, {4, 1}}})
 
@@ -130,7 +137,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
 		s.tag[1]+
 		"ggggggggggggggggggggggg\n"+
 		s.tag[3]+
-		"\n"))
+		"\n"), matchAllChromosomes, false)
 	c.Assert(err, check.IsNil)
 	c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {3, 1}}})
 }