Use tsv filename when using tab separator.

[lightning.git] / pipeline_test.go

diff --git a/pipeline_test.go b/pipeline_test.go
index e1b6427c2f3a4200c0d387cdd0d7f01bcfdc62b2..eecc30490628ec839658525058144c5ec68c3f3f 100644 (file)
--- a/pipeline_test.go
+++ b/pipeline_test.go
@@ -89,7 +89,7 @@ func (s *pipelineSuite) TestImportMerge(c *check.C) {
 
        code = (&exporter{}).RunCommand("lightning export", []string{"-local", "-ref", "testdata/ref.fasta", "-output-format", "hgvs", "-input-dir", tmpdir + "/merged", "-output-dir", tmpdir, "-output-per-chromosome=false"}, bytes.NewReader(nil), os.Stderr, os.Stderr)
        c.Check(code, check.Equals, 0)
-       hgvsout, err := ioutil.ReadFile(tmpdir + "/out.csv")
+       hgvsout, err := ioutil.ReadFile(tmpdir + "/out.tsv")
        c.Check(err, check.IsNil)
        c.Check(sortLines(string(hgvsout)), check.Equals, sortLines(`chr1:g.1_3delinsGGC        .
 chr1:g.[41_42delinsAA];[41=]   .