- c.Check(sorted, check.Equals, sortLines(`0 8d4fe9a63921b testdata/ref.fasta chr1:g.161A>T
-0 8d4fe9a63921b testdata/ref.fasta chr1:g.178A>T
-0 8d4fe9a63921b testdata/ref.fasta chr1:g.1_3delinsGGC
-0 8d4fe9a63921b testdata/ref.fasta chr1:g.222_224del
-0 ba4263ca4199c testdata/ref.fasta chr1:g.1_3delinsGGC
-0 ba4263ca4199c testdata/ref.fasta chr1:g.222_224del
-0 ba4263ca4199c testdata/ref.fasta chr1:g.41_42delinsAA
-1 139890345dbb8 testdata/ref.fasta chr1:g.302_305delinsAAAA
-4 cbfca15d241d3 testdata/ref.fasta chr2:g.125_127delinsAAA
-4 cbfca15d241d3 testdata/ref.fasta chr2:g.1_3delinsAAA
-4 f5fafe9450b02 testdata/ref.fasta chr2:g.241_245delinsAAAAA
-4 f5fafe9450b02 testdata/ref.fasta chr2:g.291C>A
-4 fe9a71a42adb4 testdata/ref.fasta chr2:g.125_127delinsAAA
-6 e36dce85efbef testdata/ref.fasta chr2:g.471_472delinsAA
-6 f81388b184f4a testdata/ref.fasta chr2:g.470_472del
+ c.Check(sorted, check.Equals, sortLines(`0,0,8d4fe9a63921b,chr1:g.161A>T
+0,0,8d4fe9a63921b,chr1:g.178A>T
+0,0,8d4fe9a63921b,chr1:g.1_3delinsGGC
+0,0,8d4fe9a63921b,chr1:g.222_224del
+0,0,ba4263ca4199c,chr1:g.1_3delinsGGC
+0,0,ba4263ca4199c,chr1:g.222_224del
+0,0,ba4263ca4199c,chr1:g.41T>A
+0,0,ba4263ca4199c,chr1:g.42T>A
+1,1,139890345dbb8,chr1:g.302_305delinsAAAA
+4,4,cbfca15d241d3,chr2:g.125_127delinsAAA
+4,4,cbfca15d241d3,chr2:g.1_3delinsAAA
+4,4,f5fafe9450b02,chr2:g.241_245delinsAAAAA
+4,4,f5fafe9450b02,chr2:g.291C>A
+4,4,fe9a71a42adb4,chr2:g.125_127delinsAAA
+6,6,e36dce85efbef,chr2:g.471G>A
+6,6,e36dce85efbef,chr2:g.472G>A
+6,6,f81388b184f4a,chr2:g.470_472del