When not saving incomplete tilevars, still save hashes/indexes.

[lightning.git] / export.go

diff --git a/export.go b/export.go
index a37ec725bf80f4318eae2d676803391b93797414..79e75a794d98359ee4f0893d3c77499f9c0ddc29 100644 (file)
--- a/export.go
+++ b/export.go
@@ -132,7 +132,7 @@ func (cmd *exporter) RunCommand(prog string, args []string, stdin io.Reader, std
        var mtx sync.Mutex
        var cgs []CompactGenome
        tilelib := tileLibrary{
-               includeNoCalls: true,
+               retainNoCalls: true,
        }
        err = tilelib.LoadGob(context.Background(), input, func(cg CompactGenome) {
                if *pick != "" && *pick != cg.Name {
@@ -336,6 +336,12 @@ func (cmd *exporter) exportSeq(outw, bedw io.Writer, taglen int, seqname string,
                                        continue
                                }
                                genometile := tileVariant[tileLibRef{Tag: libref.Tag, Variant: variant}]
+                               if len(genometile.Sequence) == 0 {
+                                       // Hash is known but sequence
+                                       // is not, e.g., retainNoCalls
+                                       // was false during import
+                                       continue
+                               }
                                refSequence := reftile.Sequence
                                // If needed, extend the reference
                                // sequence up to the tag at the end