import (
"bufio"
+ "compress/gzip"
"encoding/gob"
"io"
+ "io/ioutil"
_ "net/http/pprof"
"golang.org/x/crypto/blake2b"
TileVariants []TileVariant
}
-func ReadCompactGenomes(rdr io.Reader) ([]CompactGenome, error) {
+func ReadCompactGenomes(rdr io.Reader, gz bool) ([]CompactGenome, error) {
var ret []CompactGenome
- err := DecodeLibrary(rdr, func(ent *LibraryEntry) error {
+ err := DecodeLibrary(rdr, gz, func(ent *LibraryEntry) error {
ret = append(ret, ent.CompactGenomes...)
return nil
})
return ret, err
}
-func DecodeLibrary(rdr io.Reader, cb func(*LibraryEntry) error) error {
- dec := gob.NewDecoder(bufio.NewReaderSize(rdr, 1<<26))
+func DecodeLibrary(rdr io.Reader, gz bool, cb func(*LibraryEntry) error) error {
+ zrdr := ioutil.NopCloser(rdr)
var err error
+ if gz {
+ zrdr, err = gzip.NewReader(bufio.NewReaderSize(rdr, 1<<26))
+ if err != nil {
+ return err
+ }
+ }
+ dec := gob.NewDecoder(zrdr)
for err == nil {
var ent LibraryEntry
err = dec.Decode(&ent)
err = cb(&ent)
}
}
- if err == io.EOF {
- return nil
- } else {
+ if err != io.EOF {
return err
}
+ return zrdr.Close()
}