Gzip gob files.

[lightning.git] / filter.go

diff --git a/filter.go b/filter.go
index a4ffce8e7aa4d0c6ec355d7625a77ef6c52ff87d..51652681543df2921caee8ec790f4065ee146542 100644 (file)
--- a/filter.go
+++ b/filter.go
@@ -11,6 +11,7 @@ import (
        "net/http"
        _ "net/http/pprof"
        "os"
+       "strings"
 
        "git.arvados.org/arvados.git/sdk/go/arvados"
        log "github.com/sirupsen/logrus"
@@ -165,7 +166,7 @@ func (cmd *filtercmd) RunCommand(prog string, args []string, stdin io.Reader, st
                defer infile.Close()
        }
        log.Print("reading")
-       cgs, err := ReadCompactGenomes(infile)
+       cgs, err := ReadCompactGenomes(infile, strings.HasSuffix(*inputFilename, ".gz"))
        if err != nil {
                return 1
        }