tilelib := tileLibrary{
retainNoCalls: true,
}
- err = tilelib.LoadGob(context.Background(), input, func(cg CompactGenome) {
+ err = tilelib.LoadGob(context.Background(), input, strings.HasSuffix(*inputFilename, ".gz"), func(cg CompactGenome) {
if *pick != "" && *pick != cg.Name {
return
}
bedbufw = bufio.NewWriter(bedout)
}
- err = cmd.export(bufw, bedout, input, tilelib.taglib.keylen, refseq, cgs)
+ err = cmd.export(bufw, bedout, input, strings.HasSuffix(*inputFilename, ".gz"), tilelib.taglib.keylen, refseq, cgs)
if err != nil {
return 1
}
return 0
}
-func (cmd *exporter) export(out, bedout io.Writer, librdr io.Reader, taglen int, refseq map[string][]tileLibRef, cgs []CompactGenome) error {
+func (cmd *exporter) export(out, bedout io.Writer, librdr io.Reader, gz bool, taglen int, refseq map[string][]tileLibRef, cgs []CompactGenome) error {
need := map[tileLibRef]bool{}
var seqnames []string
for seqname, librefs := range refseq {
log.Infof("export: loading %d tile variants", len(need))
tileVariant := map[tileLibRef]TileVariant{}
- err := DecodeLibrary(librdr, func(ent *LibraryEntry) error {
+ err := DecodeLibrary(librdr, gz, func(ent *LibraryEntry) error {
for _, tv := range ent.TileVariants {
libref := tileLibRef{Tag: tv.Tag, Variant: tv.Variant}
if need[libref] {