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Call SNPs separately when called within 1bp of start/end of indels.
[lightning.git]
/
flake.go
diff --git
a/flake.go
b/flake.go
index 20f25c78ce8634b87b0e1b52931aa1e35f16398a..7f583fd26f74cb6874f82e56ae2a2b37b3423871 100644
(file)
--- a/
flake.go
+++ b/
flake.go
@@
-1,3
+1,7
@@
+// Copyright (C) The Lightning Authors. All rights reserved.
+//
+// SPDX-License-Identifier: AGPL-3.0
+
package lightning
import (
package lightning
import (
@@
-83,7
+87,7
@@
func (cmd *flakecmd) RunCommand(prog string, args []string, stdin io.Reader, std
retainTileSequences: true,
compactGenomes: map[string][]tileVariantID{},
}
retainTileSequences: true,
compactGenomes: map[string][]tileVariantID{},
}
- err = tilelib.LoadDir(context.Background(), *inputDir
, nil
)
+ err = tilelib.LoadDir(context.Background(), *inputDir)
if err != nil {
return 1
}
if err != nil {
return 1
}