out, _ := exec.Command("find", slicedir, "-ls").CombinedOutput()
c.Logf("%s", out)
+ c.Log("=== dump ===")
+ {
+ dumpdir := c.MkDir()
+ exited = (&dump{}).RunCommand("dump", []string{
+ "-local=true",
+ "-tags=4,6,7",
+ "-input-dir=" + slicedir,
+ "-output-dir=" + dumpdir,
+ }, nil, os.Stderr, os.Stderr)
+ c.Check(exited, check.Equals, 0)
+ out, _ := exec.Command("find", dumpdir, "-ls").CombinedOutput()
+ c.Logf("%s", out)
+ dumped, err := ioutil.ReadFile(dumpdir + "/variants.csv")
+ c.Assert(err, check.IsNil)
+ c.Logf("%s", dumped)
+ c.Check(string(dumped), check.Matches, `(?ms).*\n6,1,1,chr2,349,AAAACTG.*`)
+ }
+
c.Log("=== slice-numpy ===")
{
npydir := c.MkDir()