Fix panic on blank line in fasta.

[lightning.git] / cmd.go

diff --git a/cmd.go b/cmd.go
index 24f4d5160ec3146e67abc650f88e2b84cb116893..c40c06369e8fcd94a20aacc0bc2dce6abd55c965 100644 (file)
--- a/cmd.go
+++ b/cmd.go
@@ -16,11 +16,15 @@ var (
                "-version":  cmd.Version,
                "--version": cmd.Version,
 
+               "ref2genome":         &ref2genome{},
+               "vcf2fasta":          &vcf2fasta{},
                "import":             &importer{},
                "export-numpy":       &exportNumpy{},
                "filter":             &filterer{},
                "build-docker-image": &buildDockerImage{},
                "pca":                &pythonPCA{},
+               "plot":               &pythonPlot{},
+               "diff-fasta":         &diffFasta{},
        })
 )
 
@@ -41,7 +45,7 @@ func (cmd *buildDockerImage) RunCommand(prog string, args []string, stdin io.Rea
 RUN DEBIAN_FRONTEND=noninteractive \
   apt-get update && \
   apt-get dist-upgrade -y && \
-  apt-get install -y --no-install-recommends bcftools samtools python3-sklearn && \
+  apt-get install -y --no-install-recommends bcftools bedtools samtools python2 python3-sklearn python3-matplotlib && \
   apt-get clean
 `), 0644)
        if err != nil {