"-output-labels", "/mnt/output/labels.csv",
"-regions", *regionsFilename,
"-expand-regions", fmt.Sprintf("%d", *expandRegions),
- "-max-variants", fmt.Sprintf("%d", cmd.filter.MaxVariants),
- "-min-coverage", fmt.Sprintf("%f", cmd.filter.MinCoverage),
- "-max-tag", fmt.Sprintf("%d", cmd.filter.MaxTag),
"-chunks", fmt.Sprintf("%d", *chunks),
}
+ runner.Args = append(runner.Args, cmd.filter.Args()...)
var output string
output, err = runner.Run()
if err != nil {