+// Copyright (C) The Lightning Authors. All rights reserved.
+//
+// SPDX-License-Identifier: AGPL-3.0
+
package hgvs
import (
{
a: "aaGGttAAtttt",
b: "aaCCttttttC",
- expect: []string{"3_4delinsCC", "7_8del", "12_13insC"},
+ expect: []string{"3G>C", "4G>C", "7_8del", "12_13insC"},
},
{
// without cleanup, diffmatchpatch solves this as {"3del", "=A", "4_5insA"}
// without cleanup, diffmatchpatch solves this as {"3_4del", "=A", "5_6insAA"}
a: "agggaggggg",
b: "agAAaggggg",
- expect: []string{"3_4delinsAA"},
+ expect: []string{"3G>A", "4G>A"},
},
{
// without cleanup, diffmatchpatch solves this as {"3_4del", "=A", "5_6insCA"}
a: "agggaggggg",
b: "agACaggggg",
- expect: []string{"3_4delinsAC"},
+ expect: []string{"3G>A", "4G>C"},
},
{
// without cleanup, diffmatchpatch solves this as {"3_7del", "=A", "8_9insAAACA"}
{
a: "agggaggggg",
b: "agCAaggggg",
- expect: []string{"3_4delinsCA"},
+ expect: []string{"3G>C", "4G>A"},
},
{
a: "agggg",
b: "agAAg",
- expect: []string{"3_4delinsAA"},
+ expect: []string{"3G>A", "4G>A"},
+ },
+ {
+ a: "aggggg",
+ b: "agAAAg",
+ expect: []string{"3_5delinsAAA"},
},
{
a: "acgtgaa",
b: "acTtgaa",
expect: []string{"3G>T"},
},
+ {
+ a: "tcagaagac",
+ b: "tcaAaagac",
+ expect: []string{"4G>A"},
+ },
+ {
+ a: "tcagatggac",
+ b: "tcaAaCggac",
+ expect: []string{"4G>A", "6T>C"},
+ },
+ {
+ a: "tcagatggac",
+ b: "tcaAaCggTc",
+ expect: []string{"4G>A", "6T>C", "9A>T"},
+ },
+ {
+ a: "tcagatggac",
+ b: "tcaAaCCggTc",
+ expect: []string{"4G>A", "6delinsCC", "9A>T"},
+ },
+ {
+ a: "tcatagagac",
+ b: "tcacaagac",
+ expect: []string{"4T>C", "6del"},
+ },
+ {
+ a: "tcatcgagac",
+ b: "tcGCcgagac",
+ expect: []string{"3A>G", "4T>C"},
+ },
+ {
+ a: "tcatcgagac",
+ b: "tcGCcggac",
+ expect: []string{"3A>G", "4T>C", "7del"},
+ },
+ {
+ // should delete leftmost
+ a: "acgacaTTtttacac",
+ b: "acgacatttacac",
+ expect: []string{"7_8del"},
+ },
+ {
+ // should delete leftmost
+ a: "acgacATatatacac",
+ b: "acgacatatacac",
+ expect: []string{"6_7del"},
+ },
+ {
+ // should insert leftmost
+ a: "acgacatttacac",
+ b: "acgacaTTtttacac",
+ expect: []string{"6_7insTT"},
+ },
+ {
+ // should insert leftmost
+ a: "acgacatatacac",
+ b: "acgacATatatacac",
+ expect: []string{"5_6insAT"},
+ },
+ {
+ a: "cccacGATAtatcc",
+ b: "cccactatcc",
+ expect: []string{"6_9del"},
+ },
+ {
+ a: "acGATAtatcc",
+ b: "actatcc",
+ expect: []string{"3_6del"},
+ },
+ {
+ a: "acTTTTTatcc",
+ b: "acGTTTatcc",
+ expect: []string{"3_4delinsG"},
+ },
+ {
+ a: "acTTTTatcc",
+ b: "acGTTTTTatcc",
+ expect: []string{"2_3insGT"},
+ },
+ {
+ a: "aGACGGACAGGGCCCgg",
+ b: "agg",
+ expect: []string{"3_15del"},
+ },
} {
c.Log(trial)
var vars []string