-package main
+// Copyright (C) The Lightning Authors. All rights reserved.
+//
+// SPDX-License-Identifier: AGPL-3.0
+
+package lightning
import (
"bytes"
exited := (&diffFasta{}).RunCommand("diff-fasta", []string{"-sequence", "chr2", "-offset", "1000", tempdir + "/f1.fa", tempdir + "/f2.fa"}, nil, &output, os.Stderr)
c.Check(exited, check.Equals, 0)
c.Check("\n"+output.String(), check.Equals, `
-chr2:g.1008C>G chr2 1008 C G
-chr2:g.1028_1029delinsTT chr2 1028 AA TT
-chr2:g.1032_1033insA chr2 1033 A
+chr2:g.1008C>G chr2 1008 C G false
+chr2:g.1028A>T chr2 1028 A T false
+chr2:g.1029A>T chr2 1029 A T false
+chr2:g.1032_1033insA chr2 1033 A false
`)
}