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Update memory-size log message.
[lightning.git]
/
diff.go
diff --git
a/diff.go
b/diff.go
index 2740104cf8b0a500248608a9ea1d00da2dee4200..4a328ac75600645b934cd4a9b972fa83c06273b1 100644
(file)
--- a/
diff.go
+++ b/
diff.go
@@
-1,4
+1,8
@@
-package main
+// Copyright (C) The Lightning Authors. All rights reserved.
+//
+// SPDX-License-Identifier: AGPL-3.0
+
+package lightning
import (
"bufio"
import (
"bufio"
@@
-49,6
+53,7
@@
func (cmd *diffFasta) RunCommand(prog string, args []string, stdin io.Reader, st
}
defer f.Close()
scanner := bufio.NewScanner(f)
}
defer f.Close()
scanner := bufio.NewScanner(f)
+ scanner.Buffer(nil, 64*1024*1024)
for scanner.Scan() {
buf := scanner.Bytes()
if len(buf) > 0 && buf[0] != '>' {
for scanner.Scan() {
buf := scanner.Bytes()
if len(buf) > 0 && buf[0] != '>' {
@@
-64,14
+69,14
@@
func (cmd *diffFasta) RunCommand(prog string, args []string, stdin io.Reader, st
}
}
}
}
- variants := hgvs.Diff(string(fasta[0]), string(fasta[1]), *timeout)
+ variants
, timedOut
:= hgvs.Diff(string(fasta[0]), string(fasta[1]), *timeout)
if *offset != 0 {
for i := range variants {
variants[i].Position += *offset
}
}
for _, v := range variants {
if *offset != 0 {
for i := range variants {
variants[i].Position += *offset
}
}
for _, v := range variants {
- fmt.Fprintf(stdout, "%s:g.%s\t%s\t%d\t%s\t%s\
n", *sequence, v.String(), *sequence, v.Position, v.Ref, v.New
)
+ fmt.Fprintf(stdout, "%s:g.%s\t%s\t%d\t%s\t%s\
t%v\n", *sequence, v.String(), *sequence, v.Position, v.Ref, v.New, timedOut
)
}
return 0
}
}
return 0
}