-package main
+// Copyright (C) The Lightning Authors. All rights reserved.
+//
+// SPDX-License-Identifier: AGPL-3.0
+
+package lightning
import (
"bufio"
retainNoCalls: true,
compactGenomes: map[string][]tileVariantID{},
}
- err = tilelib.LoadGob(context.Background(), input, strings.HasSuffix(*inputFilename, ".gz"), nil)
+ err = tilelib.LoadGob(context.Background(), input, strings.HasSuffix(*inputFilename, ".gz"))
if err != nil {
return 1
}
tilelib.Tidy()
log.Print("converting cgs to array")
- data, rows, cols, _ := cgs2array(tilelib)
+ data, rows, cols := cgs2array(tilelib, cgnames(tilelib), lowqual(tilelib), nil, 0, len(tilelib.variant))
if *onehot {
log.Printf("recode one-hot: %d rows, %d cols", rows, cols)
data, _, cols = recodeOnehot(data, cols)