5,"chr2.470_472del"
6,"chr2.471_472delinsAA"
`)
+
+ c.Logf("export hgvs-numpy with p-value threshold")
+ outdir = c.MkDir()
+ err = ioutil.WriteFile(tmpdir+"/cases", []byte("input1\n"), 0777)
+ c.Assert(err, check.IsNil)
+ exited = (&exporter{}).RunCommand("export", []string{
+ "-local=true",
+ "-input-dir=" + input,
+ "-p-value=0.05",
+ "-cases=" + tmpdir + "/cases",
+ "-output-dir=" + outdir,
+ "-output-format=hgvs-numpy",
+ "-ref=testdata/ref.fasta",
+ "-match-genome=input[12]",
+ }, nil, os.Stderr, os.Stderr)
+ c.Check(exited, check.Equals, 0)
+
}