Configurable chromosome name pattern.

[lightning.git] / tilelib_test.go

diff --git a/tilelib_test.go b/tilelib_test.go
index 6d6ff5abb8245c8315e110070c7302983ee9e593..947d456ac8726cab4f74cfafbbb88e991afe543b 100644 (file)
--- a/tilelib_test.go
+++ b/tilelib_test.go
@@ -2,6 +2,7 @@ package main
 
 import (
        "bytes"
+       "regexp"
        "strings"
 
        "gopkg.in/check.v1"
@@ -32,6 +33,8 @@ gttattaataataacttatcatca
 }
 
 func (s *tilelibSuite) TestSkipOOO(c *check.C) {
+       matchAllChromosomes := regexp.MustCompile(".")
+
        // tags appear in seq: 4, 0, 2 (but skipOOO is false)
        tilelib := &tileLibrary{taglib: &s.taglib, skipOOO: false}
        tseq, _, err := tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
@@ -40,7 +43,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[0]+
                "cccccccccccccccccccc\n"+
                s.tag[2]+
-               "\n"))
+               "\n"), matchAllChromosomes)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{4, 1}, {0, 1}, {2, 1}}})
 
@@ -52,7 +55,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[1]+
                "ggggggggggggggggggggggg\n"+
                s.tag[2]+
-               "\n"))
+               "\n"), matchAllChromosomes)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {2, 1}}})
 
@@ -64,7 +67,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[3]+
                "ggggggggggggggggggggggg\n"+
                s.tag[4]+
-               "\n"))
+               "\n"), matchAllChromosomes)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{2, 1}, {3, 1}, {4, 1}}})
 
@@ -76,7 +79,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[0]+
                "ggggggggggggggggggggggg\n"+
                s.tag[2]+
-               "\n"))
+               "\n"), matchAllChromosomes)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {2, 1}}})
 
@@ -88,7 +91,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[2]+
                "ggggggggggggggggggggggg\n"+
                s.tag[1]+
-               "\n"))
+               "\n"), matchAllChromosomes)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}}})
 
@@ -102,7 +105,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[1]+
                "ggggggggggggggggggggggg\n"+
                s.tag[2]+
-               "\n"))
+               "\n"), matchAllChromosomes)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {2, 1}}})
 
@@ -118,7 +121,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[0]+
                "ggggggggggggggggggggggg\n"+
                s.tag[4]+
-               "\n"))
+               "\n"), matchAllChromosomes)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {3, 1}, {4, 1}}})
 
@@ -130,7 +133,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[1]+
                "ggggggggggggggggggggggg\n"+
                s.tag[3]+
-               "\n"))
+               "\n"), matchAllChromosomes)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {3, 1}}})
 }