Fix some tests.

[lightning.git] / tilelib_test.go

diff --git a/tilelib_test.go b/tilelib_test.go
index 1e5b35c46c48e1ebf275057c4b4ec2d8cd34ae39..7a2910b120723c8f0b83f8eb05108ef7e2595c24 100644 (file)
--- a/tilelib_test.go
+++ b/tilelib_test.go
@@ -47,7 +47,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[0]+
                "cccccccccccccccccccc\n"+
                s.tag[2]+
-               "\n"), matchAllChromosomes)
+               "\n"), matchAllChromosomes, false)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{4, 1}, {0, 1}, {2, 1}}})
 
@@ -59,7 +59,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[1]+
                "ggggggggggggggggggggggg\n"+
                s.tag[2]+
-               "\n"), matchAllChromosomes)
+               "\n"), matchAllChromosomes, false)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {2, 1}}})
 
@@ -71,7 +71,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[3]+
                "ggggggggggggggggggggggg\n"+
                s.tag[4]+
-               "\n"), matchAllChromosomes)
+               "\n"), matchAllChromosomes, false)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{2, 1}, {3, 1}, {4, 1}}})
 
@@ -83,7 +83,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[0]+
                "ggggggggggggggggggggggg\n"+
                s.tag[2]+
-               "\n"), matchAllChromosomes)
+               "\n"), matchAllChromosomes, false)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {2, 1}}})
 
@@ -95,12 +95,12 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[2]+
                "ggggggggggggggggggggggg\n"+
                s.tag[1]+
-               "\n"), matchAllChromosomes)
+               "\n"), matchAllChromosomes, false)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}}})
 
        // tags appear in seq: 0, 1, 1, 2 -> skip second tag1
-       tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true}
+       tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true, useDups: true}
        tseq, _, err = tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
                s.tag[0]+
                "cccccccccccccccccccc\n"+
@@ -109,12 +109,12 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[1]+
                "ggggggggggggggggggggggg\n"+
                s.tag[2]+
-               "\n"), matchAllChromosomes)
+               "\n"), matchAllChromosomes, false)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {2, 1}}})
 
        // tags appear in seq: 0, 1, 3, 0, 4 -> skip second tag0
-       tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true}
+       tilelib = &tileLibrary{taglib: &s.taglib, skipOOO: true, useDups: true}
        tseq, _, err = tilelib.TileFasta("test-label", bytes.NewBufferString(">test-seq\n"+
                s.tag[0]+
                "cccccccccccccccccccc\n"+
@@ -125,7 +125,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[0]+
                "ggggggggggggggggggggggg\n"+
                s.tag[4]+
-               "\n"), matchAllChromosomes)
+               "\n"), matchAllChromosomes, false)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {3, 1}, {4, 1}}})
 
@@ -137,7 +137,7 @@ func (s *tilelibSuite) TestSkipOOO(c *check.C) {
                s.tag[1]+
                "ggggggggggggggggggggggg\n"+
                s.tag[3]+
-               "\n"), matchAllChromosomes)
+               "\n"), matchAllChromosomes, false)
        c.Assert(err, check.IsNil)
        c.Check(tseq, check.DeepEquals, tileSeq{"test-seq": []tileLibRef{{0, 1}, {1, 1}, {3, 1}}})
 }