flags.BoolVar(&cmd.runLocal, "local", false, "run on local host (default: run in an arvados container)")
flags.BoolVar(&cmd.skipOOO, "skip-ooo", false, "skip out-of-order tags")
flags.BoolVar(&cmd.outputTiles, "output-tiles", false, "include tile variant sequences in output file")
flags.BoolVar(&cmd.runLocal, "local", false, "run on local host (default: run in an arvados container)")
flags.BoolVar(&cmd.skipOOO, "skip-ooo", false, "skip out-of-order tags")
flags.BoolVar(&cmd.outputTiles, "output-tiles", false, "include tile variant sequences in output file")