Write hgvs-based numpy matrix.

[lightning.git] / export_test.go

diff --git a/export_test.go b/export_test.go
index 2a020b9eba272198a95733be3b31392b02015a24..7261f99ea3fb843e187826a82848fb3186d2b8fd 100644 (file)
--- a/export_test.go
+++ b/export_test.go
@@ -31,7 +31,7 @@ func (s *exportSuite) TestFastaToHGVS(c *check.C) {
                "-ref=testdata/ref.fasta",
        }, &buffer, &output, os.Stderr)
        c.Check(exited, check.Equals, 0)
-       c.Check(output.String(), check.Equals, `chr1.1_3delinsGGC       1       0
+       c.Check(sortLines(output.String()), check.Equals, sortLines(`chr1.1_3delinsGGC  1       0
 chr1.41_42delinsAA     1       0
 chr1.161A>T    1       0
 chr1.178A>T    1       0
@@ -44,7 +44,7 @@ chr2.258_269delinsAA  1       0
 chr2.315C>A    1       0
 chr2.470_472del        1       0
 chr2.471_472delinsAA   1       0
-`)
+`))
        labels, err := ioutil.ReadFile(tmpdir + "/labels.csv")
        c.Check(err, check.IsNil)
        c.Check(string(labels), check.Equals, `0,"input1","-"