Renumber variants by allele count.

[lightning.git] / slice_test.go

diff --git a/slice_test.go b/slice_test.go
index e59821480ecc19023ad35888d013b1aed5fa9aca..c73d3d7dc0cd8496e4e02b9e93f84f41ad18a19b 100644 (file)
--- a/slice_test.go
+++ b/slice_test.go
@@ -85,9 +85,7 @@ func (s *sliceSuite) TestImportAndSlice(c *check.C) {
        c.Assert(err, check.IsNil)
        c.Check(npy.Shape, check.DeepEquals, []int{2, 4})
        variants, err := npy.GetInt16()
-       if c.Check(variants, check.HasLen, 8) {
-               c.Check(variants[4:], check.DeepEquals, []int16{-1, -1, 1, 1}) // TODO: check first row too, when stable
-       }
+       c.Check(variants, check.DeepEquals, []int16{3, 2, 1, 2, -1, -1, 1, 1})
 
        annotations, err := ioutil.ReadFile(npydir + "/matrix.0000.annotations.csv")
        c.Assert(err, check.IsNil)