package main

import (
	"flag"
	"fmt"
	"io"
	_ "net/http/pprof"

	"git.arvados.org/arvados.git/sdk/go/arvados"
)

type pythonPCA struct{}

func (cmd *pythonPCA) RunCommand(prog string, args []string, stdin io.Reader, stdout, stderr io.Writer) int {
	var err error
	defer func() {
		if err != nil {
			fmt.Fprintf(stderr, "%s\n", err)
		}
	}()
	flags := flag.NewFlagSet("", flag.ContinueOnError)
	flags.SetOutput(stderr)
	projectUUID := flags.String("project", "", "project `UUID` for output data")
	inputFilename := flags.String("i", "", "input `file`")
	err = flags.Parse(args)
	if err == flag.ErrHelp {
		err = nil
		return 0
	} else if err != nil {
		return 2
	}

	runner := arvadosContainerRunner{
		Name:        "lightning pca",
		Client:      arvados.NewClientFromEnv(),
		ProjectUUID: *projectUUID,
		RAM:         120000000000,
		VCPUs:       1,
	}
	err = runner.TranslatePaths(inputFilename)
	if err != nil {
		return 1
	}
	runner.Prog = "python3"
	runner.Args = []string{"-c", `import sys
import scipy
from sklearn.decomposition import PCA
scipy.save(sys.argv[2], PCA(n_components=4).fit_transform(scipy.load(sys.argv[1])))`, *inputFilename, "/mnt/output/pca.npy"}
	err = runner.Run()
	if err != nil {
		return 1
	}
	return 0
}