14287: Shut down RailsAPI before trying to reinstall.
[arvados.git] / crunch_scripts /
drwxr-xr-x   ..
-rwxr-xr-x 2129 GATK2-VariantFiltration
-rwxr-xr-x 2934 GATK2-bqsr
-rwxr-xr-x 7477 GATK2-merge-call
-rwxr-xr-x 5314 GATK2-realign
-rwxr-xr-x 5797 arvados-bcbio-nextgen.py
-rw-r--r-- 3843 arvados_bwa.py
-rw-r--r-- 1742 arvados_gatk2.py
-rw-r--r-- 1603 arvados_ipc.py
-rw-r--r-- 1471 arvados_picard.py
-rw-r--r-- 3763 arvados_samtools.py
-rwxr-xr-x 4033 bwa-aln
-rwxr-xr-x 1295 bwa-index
-rwxr-xr-x 1300 collection-merge
-rwxr-xr-x 255 crunchrunner
drwxr-xr-x - crunchutil
-rwxr-xr-x 4096 cwl-runner
-rwxr-xr-x 1862 decompress-all.py
-rwxr-xr-x 518 file-select
-rwxr-xr-x 753 grep
-rwxr-xr-x 1110 hash
-rwxr-xr-x 4861 pgp-survey-import
-rwxr-xr-x 628 pgp-survey-parse
-rwxr-xr-x 6859 picard-gatk2-prep
-rw-r--r-- 2526 pyrtg.py
-rwxr-xr-x 831 rtg-fasta2sdf
-rwxr-xr-x 1532 rtg-fastq2sdf
-rwxr-xr-x 1253 rtg-map
-rwxr-xr-x 1086 rtg-snp
-rwxr-xr-x 16274 run-command
-rwxr-xr-x 2118 split-fastq.py
drwxr-xr-x - test