projects
/
arvados.git
/ shortlog
summary
| shortlog |
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
arvados.git
2016-04-05
Peter Amstutz
8712: Propagate return value of clear() from super...
commit
|
commitdiff
|
tree
|
snapshot
2016-04-04
Peter Amstutz
8712: Set self.collection = None when clearing the...
commit
|
commitdiff
|
tree
|
snapshot
2016-04-04
Peter Amstutz
8712: Test case that reproduces cache-spill bug.
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Brett Smith
Merge branch '8811-srun-sync-tempfail-wip'
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Brett Smith
8811: crunch-job srun_sync detects and reports SLURM...
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Peter Amstutz
Merge branch '8816-compute-node-update-exception' close...
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Peter Amstutz
8816: Use is_cloud_exception to determine if exception...
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Ward Vandewege
Fix package building by pinning docker-py to version...
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Brett Smith
Merge branch '8782-reapchildren-after-signal-wip'
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Brett Smith
8782: Remove WIFEXITED check from crunch-job reapchildren.
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Peter Amstutz
Merge branch '8857-cwl-job-reuse' closes #8857
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Peter Amstutz
8816: Handle cloud errors slightly differently from...
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Peter Amstutz
8816: ComputeNodeUpdateActor._throttle_errors logs...
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Ward Vandewege
A few more fixes for run-build-packages-python-and...
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Peter Amstutz
Merge branch 'master' into 8857-cwl-job-reuse
commit
|
commitdiff
|
tree
|
snapshot
2016-04-01
Ward Vandewege
Add build/run-build-packages-python-and-ruby.sh script...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
Merge branch '8828-which-crunchrunner' closes #8828
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
8828: Fix bind mount point for certificates.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
8828: Move logic for checking $(which crunchrunner...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Ward Vandewege
Build newer cwltool version.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
Merge branch '8840-lock-job-record' closes #8840
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
Merge branch '8654-arv-jobs-cwl-runner' closes #8654
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
8654: Update test because input cwl files changed.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
8654: Fix versionstring(). Improve help text / comment...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
Merge branch 'master' into 8654-arv-jobs-cwl-runner
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
8654: Rename tests/inp/ to test/input/
commit
|
commitdiff
|
tree
|
snapshot
2016-03-31
Peter Amstutz
8857: Add --ignore-docker-for-reuse option to assist...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-30
Peter Amstutz
8840: Use 'with_lock' instead of 'transaction' in Job...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-30
Peter Amstutz
8654: Add missing test_submit
commit
|
commitdiff
|
tree
|
snapshot
2016-03-30
Peter Amstutz
8654: Add comments
commit
|
commitdiff
|
tree
|
snapshot
2016-03-30
Peter Amstutz
8654: Print uuid of uploaded docker image on stderr...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-30
radhika
closes #8703
commit
|
commitdiff
|
tree
|
snapshot
2016-03-30
radhika
Merge branch 'master' into 8703-job-components
commit
|
commitdiff
|
tree
|
snapshot
2016-03-30
Peter Amstutz
8654: Update test_with_arvbox.sh
commit
|
commitdiff
|
tree
|
snapshot
2016-03-30
Peter Amstutz
crunchrunner crunch script selects between $JOB_PARAMET...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
8654: Pin pyasn1_modules to version that is compatible...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
8654: Fix version string produced by arvados-cwl-runner.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
Fix sdk/cwl test refs #8815
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
Merge branch '8815-crunchrunner-everywhere' closes...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
Merge branch '8815-crunchrunner-everywhere' into 8654...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
8654: Make --submit --wait the default mode.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
radhika
8703: better organized tests
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
8815: Fix syntax errors.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
8815: Now expect /usr/local/bin/crunchrunner. Bind...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
radhika
Merge branch 'master' into 8703-job-components
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Ward Vandewege
Build a package for crunchrunner.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
8815: Rely on system-provided crunchrunner. Also use...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-29
Peter Amstutz
8815: Crunch-job bind mounts crunchrunner binary and...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-28
Peter Amstutz
8654: Bump cwltool version dependency and print cwl...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-28
Peter Amstutz
Merge branch 'master' into 8654-arv-jobs-cwl-runner
commit
|
commitdiff
|
tree
|
snapshot
2016-03-27
Brett Smith
Merge branch '8800-queue-query'
commit
|
commitdiff
|
tree
|
snapshot
2016-03-27
Brett Smith
8800: Document the new queue_position implementation.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-27
Ward Vandewege
Fix package build and test of the arvados-cwl-runner...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-26
Tom Clegg
8800: Drop queue_position support.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-26
Ward Vandewege
Bump up the iteration for the python-arvados-cwl-runner...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-26
Ward Vandewege
Fix a few more dependencies for the python-arvados...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-25
Peter Amstutz
8654: Passes 100% CWL conformance tests using running...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-25
Peter Amstutz
8654: --version reports versions for arvados-cwl-runner...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-24
Tom Clegg
8556: Update method signature for current SDK version.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-24
radhika
8703: add "components" hash to job.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-24
Tom Clegg
Merge branch '8767-items-available'
commit
|
commitdiff
|
tree
|
snapshot
2016-03-24
Tom Clegg
8767: Make offset work properly in ApiClientAuthorizati...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-23
Peter Amstutz
Don't retry slurm subprocess calls that raise OSError...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-23
Peter Amstutz
Fix merge conflict. refs #8766
commit
|
commitdiff
|
tree
|
snapshot
2016-03-23
Peter Amstutz
8654: Add value for quiet to args.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-23
Peter Amstutz
Merge branch '8766-cwl-collection-project'
commit
|
commitdiff
|
tree
|
snapshot
2016-03-23
Peter Amstutz
Merge branch 'master' into 8766-cwl-collection-project
commit
|
commitdiff
|
tree
|
snapshot
2016-03-23
Ward Vandewege
Build script fix: make sure that run-build-docker-jobs...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-23
Peter Amstutz
Merge branch '8766-cwl-collection-project' into 8654...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-23
Peter Amstutz
8766: Refactor logic to copy output collection and...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-23
Ward Vandewege
Fix sdk/cwl tests after commit 9df4d7da24ef8be639af1ab8...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8766: Port logic from arv-run-pipeline-instance for...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8654: Bump cwltool version
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8654: Use iterator instead of readlines() when going...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Ward Vandewege
Clean up build/run-build-docker-jobs-image.sh a bit.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
Merge branch 'master' into 8654-arv-jobs-cwl-runner
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Tom Clegg
Merge branch '8747-fix-crash-on-update'
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Tom Clegg
8345: Do not crash when update() called without an...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
Crunchrunner fix connect os.Stderr to cmd.Stderr &...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8654: Remove print statements.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8654: Handle error on capturing runner output
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8654: Support --quiet
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8654: Support waiting for submitted runner job to complete
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8654: Upload Docker images
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8654: Bump arvados-cwl-runner version dependency on...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-22
Peter Amstutz
8654: When uploading, reuse existing collections with...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-21
Peter Amstutz
8654: Bump arvados-cwl-runner version dependency on...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-21
Peter Amstutz
8654: Job has uuid and state fields
commit
|
commitdiff
|
tree
|
snapshot
2016-03-21
Peter Amstutz
8654: Add args.debug = True to get backtraces on errors
commit
|
commitdiff
|
tree
|
snapshot
2016-03-21
Peter Amstutz
8654: Set args.submit = False
commit
|
commitdiff
|
tree
|
snapshot
2016-03-21
Peter Amstutz
8654: Add runner job to pipeline instance.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-21
Peter Amstutz
8654: Update cwl:tool entry
commit
|
commitdiff
|
tree
|
snapshot
2016-03-21
Peter Amstutz
8654: Fix keeppath and add ensure_unique_name to upload.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-21
Peter Amstutz
8654: Scanning for and uploading dependencies for submi...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-21
Peter Amstutz
Merge branch 'master' into 8654-arv-jobs-cwl-runner
commit
|
commitdiff
|
tree
|
snapshot
2016-03-20
Ward Vandewege
More small build script improvements.
commit
|
commitdiff
|
tree
|
snapshot
2016-03-20
Ward Vandewege
Build script improvements:
commit
|
commitdiff
|
tree
|
snapshot
2016-03-19
Peter Amstutz
Enable BaseComputeNodeDriver.list_nodes to pass through...
commit
|
commitdiff
|
tree
|
snapshot
2016-03-18
Brett Smith
Merge branch '8002-no-pyvcf-wip'
commit
|
commitdiff
|
tree
|
snapshot
2016-03-18
Brett Smith
8002: Stop backporting PyVCF.
commit
|
commitdiff
|
tree
|
snapshot
next