From ffae77ee85f7a6dd4a095298aaa9dba145c98bdd Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Wed, 14 Apr 2021 16:13:26 -0400 Subject: [PATCH] Fix regression refs #17462 Arvados-DCO-1.1-Signed-off-by: Peter Amstutz --- sdk/cwl/arvados_cwl/arvworkflow.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/sdk/cwl/arvados_cwl/arvworkflow.py b/sdk/cwl/arvados_cwl/arvworkflow.py index 6067ae9f44..4fe82a6fe1 100644 --- a/sdk/cwl/arvados_cwl/arvworkflow.py +++ b/sdk/cwl/arvados_cwl/arvworkflow.py @@ -17,7 +17,7 @@ from cwltool.pack import pack from cwltool.load_tool import fetch_document, resolve_and_validate_document from cwltool.process import shortname from cwltool.workflow import Workflow, WorkflowException, WorkflowStep -from cwltool.utils import adjustFileObjs, adjustDirObjs, visit_class +from cwltool.utils import adjustFileObjs, adjustDirObjs, visit_class, normalizeFilesDirs from cwltool.context import LoadingContext import ruamel.yaml as yaml @@ -186,6 +186,7 @@ class ArvadosWorkflow(Workflow): discover_secondary_files(self.arvrunner.fs_access, builder, self.tool["inputs"], joborder) + normalizeFilesDirs(joborder) with Perf(metrics, "subworkflow upload_deps"): upload_dependencies(self.arvrunner, -- 2.30.2