From fa3fbd543823400c58d14df2e800a4a447bd3ee0 Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Wed, 2 Jul 2014 16:21:52 -0400 Subject: [PATCH] Fixed +x --- crunch_scripts/arvados-bcbio-nextgen.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) mode change 100644 => 100755 crunch_scripts/arvados-bcbio-nextgen.py diff --git a/crunch_scripts/arvados-bcbio-nextgen.py b/crunch_scripts/arvados-bcbio-nextgen.py old mode 100644 new mode 100755 index cd17a13e9a..13b1ef9e87 --- a/crunch_scripts/arvados-bcbio-nextgen.py +++ b/crunch_scripts/arvados-bcbio-nextgen.py @@ -64,7 +64,7 @@ with open("/usr/local/share/bcbio-nextgen/galaxy/tool-data/gatk_sorted_picard_in f.write(subst.do_substitution(p, "GRCh37\tGRCh37\tHuman (GRCh37)\t$(file $(gatk_sorted_picard_index))")) with open("/usr/local/share/bcbio-nextgen/galaxy/tool-data/picard_index.loc", "w") as f: - f.write(subst.do_substitution(p, "GRCh37\tGRCh37\tHuman (GRCh37)\t$(file $(picard_indices))")) + f.write(subst.do_substitution(p, "GRCh37\tGRCh37\tHuman (GRCh37)\t$(file $(picard_index))")) with open("/usr/local/share/bcbio-nextgen/galaxy/tool-data/sam_fa_indices.loc", "w") as f: f.write(subst.do_substitution(p, "index\tGRCh37\t$(file $(sam_fa_indices))")) -- 2.30.2